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This is the command that I am usingsudo nextflow run nf-core/chipseq \ -resume 2dcf3c47-880c-429d-937e-a93a3c0a3f39 \ --input samplesheet_chip_seq.csv \ --outdir chip_seq \ -profile docker \ --genome GRCh38 \ --read_length 200 \ --max_cpus 16 \ --max_memory '100.GB' The error I am recieving isError executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (samplesheet_chip_seq.csv)'Caused by: Process `NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (samplesheet_chip_seq.csv)` terminated with an error exit status (1)Command executed: check_samplesheet.py \ samplesheet_chip_seq.csv \ samplesheet.valid.csv cat <<-END_VERSIONS > versions.yml "NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK": python: $(python --version | sed 's/Python //g') END_VERSIONSCommand exit status: 1Command output: ERROR: Please check samplesheet -> Invalid number of columns (minimum = 5)! Line: ''Command error: WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.Work dir: /home/balaji/work/d5/015746a0a2448ae6c83952f4ebf86dTip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Description of the bug
Error with the samplesheet input
Command used and terminal output
Relevant files
This is the sample sheet that I am using:
sample,fastq_1,fastq_2,antibody,control
abl_h3k4me3,fastq/SRR524714.fastq.gz,,h3k4me3,abl_input
abl_h3k27me3,fastq/SRR524708_pass.fastq.gz,,h3k27me3,abl_input
abl_input,fastq/SRR524712.fastq.gz,,,
pm154_h3k4me3,fastq/SRR8816211.fastq.gz,,h3k4me3,pm154_input
pm154_h3k27me3,fastq/SRR8816210.fastq.gz,,h3k27me3,pm154_input
pm154_input,fastq/SRR7536856.fastq.gz,,,
System information
No response
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