diff --git a/README.md b/README.md index 09ff2465..ffc72899 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,8 @@ # ![nf-core/crisprseq](docs/images/nf-core-crisprseq_logo_light.png#gh-light-mode-only) ![nf-core/crisprseq](docs/images/nf-core-crisprseq_logo_dark.png#gh-dark-mode-only) -[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.8116072-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.8116072) +[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.7598496-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.7598496) [![GitHub Actions CI Status](https://github.com/nf-core/crisprseq/workflows/nf-core%20CI/badge.svg)](https://github.com/nf-core/crisprseq/actions?query=workflow%3A%22nf-core+CI%22) -[![GitHub Actions Linting Status](https://github.com/nf-core/crisprseq/workflows/nf-core%20linting/badge.svg)](https://github.com/nf-core/crisprseq/actions?query=workflow%3A%22nf-core+linting%22)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) +[![GitHub Actions Linting Status](https://github.com/nf-core/crisprseq/workflows/nf-core%20linting/badge.svg)](https://github.com/nf-core/crisprseq/actions?query=workflow%3A%22nf-core+linting%22)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/crisprseq/results) [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) @@ -139,7 +139,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `# ## Citations -If you use nf-core/crisprseq for your analysis, please cite it using the following doi: [10.5281/zenodo.8116072](https://doi.org/10.5281/zenodo.8116072) +If you use nf-core/crisprseq for your analysis, please cite it using the following doi: [10.5281/zenodo.7598496](https://doi.org/10.5281/zenodo.7598496) An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file. diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy index 36db450c..0e40058b 100755 --- a/lib/WorkflowMain.groovy +++ b/lib/WorkflowMain.groovy @@ -12,7 +12,7 @@ class WorkflowMain { public static String citation(workflow) { return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" + "* The pipeline\n" + - " https://doi.org/10.5281/zenodo.8116072\n\n" + + " https://doi.org/10.5281/zenodo.7598496\n\n" + "* The nf-core framework\n" + " https://doi.org/10.1038/s41587-020-0439-x\n\n" + "* Software dependencies\n" +