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DrugZ local module implementation #122

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wants to merge 9 commits into from
Closed

DrugZ local module implementation #122

wants to merge 9 commits into from

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metinyazar
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/crisprseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions GitHub Actions
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github-actions bot commented Jul 4, 2024 •
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nf-core lint overall result: Failed ❌

Posted for pipeline commit e95e0bc

+| ✅ 223 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   4 tests had warnings |!
-| ❌   1 tests failed       |-

❌ Test failures:

  • files_unchanged - .github/workflows/linting.yml does not match the template

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_exist - File is ignored: conf/test.config
  • files_exist - File is ignored: conf/test_full.config
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-07-04 12:57:07

@LaurenceKuhl
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Hi Metin,
closing this pr as we are now working on #168 because i messed up a little bit :) of course you're however still listed as a contributor of the pipeline!!

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2 participants
@metinyazar @LaurenceKuhl