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Added additional reports to Tower output #130

Merged
merged 7 commits into from
May 28, 2024
Merged

Added additional reports to Tower output #130

merged 7 commits into from
May 28, 2024

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mschaffer-incyte
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Added additional reports for targeted analysis to tower.yml so the outputs appear in the reports tab of Tower installations.

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github-actions bot commented Apr 26, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit fd82bb2

+| ✅ 222 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 2.2.0
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_exist - File is ignored: conf/test.config
  • files_exist - File is ignored: conf/test_full.config
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-05-28 08:19:09

@LaurenceKuhl
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Hi @mschaffer-incyte could you just run pre-commit run --all-files in your repo and then we should be good to go :)

@mirpedrol
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@nf-core-bot fix linting

mirpedrol
mirpedrol approved these changes May 27, 2024
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LGTM, thanks for the addition!

@mirpedrol mirpedrol merged commit f2ce14c into nf-core:dev May 28, 2024
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@mirpedrol mirpedrol mirpedrol approved these changes

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@mschaffer-incyte @LaurenceKuhl @mirpedrol @nf-core-bot