example file for --rra_contrasts

[zhouzhendiao]

MAGeCK RRA performs robust ranking aggregation to identify genes that are consistently ranked highly across multiple replicate screens. To run MAGeCK rra, --rra_contrasts should be used with a csv separated file stating the two conditions to be compared.

Hi, Can you show a example file for parameter --rra_contrasts if I start with fastq files. Sorry that I could not figure out the input for long time.

[mirpedrol]

Hi @zhouzhendiao,
You can find the documentation for this parameter here, and an example here. I hope this helps :)

[zhouzhendiao]

Thanks!