diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3613a432..ed770355 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,11 +3,16 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
-## [v2.2.0dev]
+## [v2.1.1 - Jamon Salas - patch](https://github.com/nf-core/crisprseq/releases/tag/2.1.1) - [14.12.2023]
### Added
- Update all modules to the last version in nf-core/modules ([#92](https://github.com/nf-core/crisprseq/pull/92))
+- Added cutadapt for screening analysis ([#95](https://github.com/nf-core/crisprseq/pull/95))
+
+### Fixed
+
+- Fixed paired-end for screening analysis ([#94](https://github.com/nf-core/crisprseq/pull/94))
## [v2.1.0 - Jamon Salas](https://github.com/nf-core/crisprseq/releases/tag/2.1.0) - [14.11.2023]
diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index 368215a8..baec67f1 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
report_comment: >
- This report has been generated by the nf-core/crisprseq
+ This report has been generated by the nf-core/crisprseq
analysis pipeline. For information about how to interpret these results, please see the
- documentation.
+ documentation.
report_section_order:
"nf-core-crisprseq-methods-description":
order: -1000
diff --git a/nextflow.config b/nextflow.config
index 1a8aa11d..6dd777af 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -267,7 +267,7 @@ manifest {
description = """Pipeline for the analysis of CRISPR data"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
- version = '2.2.0dev'
+ version = '2.1.1'
doi = 'https://doi.org/10.5281/zenodo.7598496'
}
diff --git a/workflows/crisprseq_screening.nf b/workflows/crisprseq_screening.nf
index e311bff5..075aa48f 100644
--- a/workflows/crisprseq_screening.nf
+++ b/workflows/crisprseq_screening.nf
@@ -141,18 +141,6 @@ workflow CRISPRSEQ_SCREENING {
.last()
.set { joined }
- //
- // MODULE: Run FastQC
- //
- FASTQC (
- ch_input
- )
-
-
- ch_versions = ch_versions.mix(FASTQC.out.versions.first())
-
-
-
//
// MODULE: Run mageck count
//