From 0e4573f9483cfe0b3dca2e8773bb51a7f9032f8f Mon Sep 17 00:00:00 2001 From: LaurenceKuhl Date: Thu, 14 Dec 2023 14:34:04 +0100 Subject: [PATCH 1/2] new release --- CHANGELOG.md | 7 ++++++- assets/multiqc_config.yml | 4 ++-- nextflow.config | 2 +- 3 files changed, 9 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3613a432..ed770355 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,11 +3,16 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## [v2.2.0dev] +## [v2.1.1 - Jamon Salas - patch](https://github.com/nf-core/crisprseq/releases/tag/2.1.1) - [14.12.2023] ### Added - Update all modules to the last version in nf-core/modules ([#92](https://github.com/nf-core/crisprseq/pull/92)) +- Added cutadapt for screening analysis ([#95](https://github.com/nf-core/crisprseq/pull/95)) + +### Fixed + +- Fixed paired-end for screening analysis ([#94](https://github.com/nf-core/crisprseq/pull/94)) ## [v2.1.0 - Jamon Salas](https://github.com/nf-core/crisprseq/releases/tag/2.1.0) - [14.11.2023] diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 368215a8..baec67f1 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/crisprseq + This report has been generated by the nf-core/crisprseq analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-crisprseq-methods-description": order: -1000 diff --git a/nextflow.config b/nextflow.config index ae0eb87d..ee7c4e6a 100644 --- a/nextflow.config +++ b/nextflow.config @@ -265,7 +265,7 @@ manifest { description = """Pipeline for the analysis of CRISPR data""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '2.2.0dev' + version = '2.1.1' doi = 'https://doi.org/10.5281/zenodo.7598496' } From aba6e3c370de5c789e3536da7d027d76e88938c1 Mon Sep 17 00:00:00 2001 From: LaurenceKuhl Date: Thu, 14 Dec 2023 14:47:58 +0100 Subject: [PATCH 2/2] remove fastqc that was ran two times --- workflows/crisprseq_screening.nf | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/workflows/crisprseq_screening.nf b/workflows/crisprseq_screening.nf index e311bff5..075aa48f 100644 --- a/workflows/crisprseq_screening.nf +++ b/workflows/crisprseq_screening.nf @@ -141,18 +141,6 @@ workflow CRISPRSEQ_SCREENING { .last() .set { joined } - // - // MODULE: Run FastQC - // - FASTQC ( - ch_input - ) - - - ch_versions = ch_versions.mix(FASTQC.out.versions.first()) - - - // // MODULE: Run mageck count //