From 9157248712bf7084a67d14d8161881c067c9f4cf Mon Sep 17 00:00:00 2001 From: laurencekuhl Date: Tue, 29 Oct 2024 11:35:27 +0100 Subject: [PATCH] Fix conda issues --- modules/local/hitselection.nf | 2 +- modules/local/matricescreation.nf | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/local/hitselection.nf b/modules/local/hitselection.nf index 8c4ea072..5f6269c2 100644 --- a/modules/local/hitselection.nf +++ b/modules/local/hitselection.nf @@ -2,7 +2,7 @@ process HITSELECTION { tag "${meta.treatment}_${meta.reference}" label 'process_high' - conda "r-base=4.4.1,r-igraph=2.0.3,r-dplyr=1.1.4,r-tidyr=1.3.1,r-readr=2.1.5,r-ggplot2=3.5.1" + conda "r-base=4.4.1 r-igraph=2.0.3 r-dplyr=1.1.4 r-tidyr=1.3.1 r-readr=2.1.5 r-ggplot2=3.5.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/mulled-v2-dcfb6eba6adda57b9d4a990b9096cb040320914f:588e2c290fce5c5c11ef2340b6184370efd2c628-0': 'biocontainers/mulled-v2-dcfb6eba6adda57b9d4a990b9096cb040320914f:588e2c290fce5c5c11ef2340b6184370efd2c628-0' }" diff --git a/modules/local/matricescreation.nf b/modules/local/matricescreation.nf index 9470b5da..e86df03b 100644 --- a/modules/local/matricescreation.nf +++ b/modules/local/matricescreation.nf @@ -1,7 +1,7 @@ process MATRICESCREATION { label 'process_single' - conda 'r-ggplot2=3.4.3 bioconductor-shortread=1.58.0 r-ggpubr=0.6.0 r-ggmsa=1.0.2 r-seqmagick=0.1.6 r-tidyr=1.3.0 r-ggseqlogo=0.1 r-cowplot=1.1.1 r-seqinr=4.2_30 r-optparse=1.7.3 r-dplyr=1.1.2 r-plyr=1.8.8 r-stringr=1.5.0 r-plotly=4.10.2' + conda 'r-ggplot2=3.4.3' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/mulled-v2-6de07928379e6eface08a0019c4a1d6b5192e805:0d77388f37ddd923a087f7792e30e83ab54c918c-0' : 'biocontainers/mulled-v2-6de07928379e6eface08a0019c4a1d6b5192e805:0d77388f37ddd923a087f7792e30e83ab54c918c-0' }"