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Low yielding samples trigger workflow error #39

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lkuchenb opened this issue Sep 25, 2020 · 2 comments
Open

Low yielding samples trigger workflow error #39

lkuchenb opened this issue Sep 25, 2020 · 2 comments
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bug Something isn't working wontfix This will not be worked on

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@lkuchenb
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For low yielding samples, OpenSwathWorkflow fails with

  Error: Unexpected internal error (There were not enough bins with the minimal number of peptides)

which breaks the workflow. Instead, the workflow should proceed and produce an informative output for the corresponding sample(s) which cannot be processed.
@lkuchenb lkuchenb added the bug Something isn't working label Sep 25, 2020
@Leon-Bichmann
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This will be difficult to adress with a single error message, it could cause several steps of the pipeline to crash.

@Leon-Bichmann Leon-Bichmann added the wontfix This will not be worked on label Nov 4, 2020
@Leon-Bichmann
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Partially adressed with PR #47
--> It could cause the alignment of multiple libraries to fail as they don't share enough peptides

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@lkuchenb @Leon-Bichmann