Help with Sample Sheet Preparation for Methyl-seq (S4 Illumina EM-seq)

[CHOWDHURY098]

Description of feature

Issue Description:
Hello,

I am working with S4 Illumina EM-seq data for Methyl-seq analysis. My dataset consists of paired normal and tumor samples, with each patient having 4 sequencing lanes (8 reads in total per patient).

I need help with formatting the sample sheet correctly for processing. Could you provide guidelines or an example format for structuring it?

Data Details:

Platform: Illumina S4 (EM-seq)
Sample type: Paired (Normal & Tumor)
Each patient: 4 lanes, 8 reads total
File structure: FASTQ files for each lane

Any help or example sample sheet format would be greatly appreciated. Thanks!

[sateeshperi]

Hi you can find that info in the usage docs here or if you look in the repo assets/samplesheet.csv is the one we use for testing