Caused by: java.nio.channels.OverlappingFileLockException

[edmundmiller]

When tests are run in CI or locally using conda the tests fail with:

  Caused by:
    java.nio.channels.OverlappingFileLockException

Caused by: #6600

Previous issues

• build: Remove conda env name #5802 (comment)
• https://nextflow.slack.com/archives/C0477AS31T5/p1718212230419419

[edmundmiller]

Options I see

• Switch CI to micromamba
• Nextflow work around for the conda bug
• Use new nf-test features #6286 might work for some reason?

[edmundmiller]

Alright confirmed that https://github.com/nf-core/modules/actions/runs/10926649144 doesn't seem to fail from an initial test standpoint, AND it's forward progress so it has my vote.

[maxulysse]

Sounds perfect to me

[SPPearce]

Yep, lets give it a go, we wanted to move to that anyway.

[apeltzer]

Any news on this fella? ;-) #6662 sits there and waiting :-P

[SPPearce]

Yep, I think we give this a go and revert if everything breaks.

[maxulysse]

#6685

[maxulysse]

#6798