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DSL2 pipeline #49

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ypriverol opened this issue May 7, 2022 · 0 comments
Open
5 tasks

DSL2 pipeline #49

ypriverol opened this issue May 7, 2022 · 0 comments
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@DongdongdongW
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documentation Improvements or additions to documentation enhancement Improvement for existing functionality feature-request Request for a new pipeline feature
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DLS2

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@ypriverol
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ypriverol commented May 7, 2022 •
edited by DongdongdongW
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We need to deploy the new version of the pipeline DSL2. The current DSL1 is not compatible with the new versions of nf-core. Tasks:

  • Create a branch called pgdb-dsl2 in https://github.com/bigbio/pgdb
  • Merge the DSL2 version into DEV in bigbio
  • Include the new versions of pypgatk
  • Test with new datasets.
  • Merge the final version into nf-core.
@ypriverol ypriverol added documentation Improvements or additions to documentation enhancement Improvement for existing functionality feature-request Request for a new pipeline feature labels May 7, 2022
@ypriverol ypriverol added this to the DLS2 milestone May 7, 2022
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@DongdongdongW DongdongdongW

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documentation Improvements or additions to documentation enhancement Improvement for existing functionality feature-request Request for a new pipeline feature
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@ypriverol @DongdongdongW