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Accept uncompressed files, for instance fastq #1343

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TheWizier opened this issue Jul 17, 2024 · 1 comment
Open

Accept uncompressed files, for instance fastq #1343

TheWizier opened this issue Jul 17, 2024 · 1 comment
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@TheWizier
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Description of feature

We are currently going through the headache of having to wait for gzip to compress fastq files just to be able to run them in this pipeline. It would have been very nice if the pipeline could accept uncompressed files as well.
@MatthiasZepper
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In the meantime, I suggest using crabz or pigz for a way faster compression than gzip.

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@MatthiasZepper @TheWizier