3.9.0

Issues

• Only calculate DICT when needed

  enhancement
  Enhancement

  nf-core/sarek#2023 · Filter by author FriederikeHanssen opened on Oct 13, 2025 · 3.9.0
  

• varlociraptor issues

  Bug

  nf-core/sarek#2030 · Filter by author famosab opened on Oct 16, 2025 · 3.9.0
  10

• Unclear docu on non-human genomes

  bugdocs
  nf-core/sarek#2022 · Filter by author d4straub opened on Oct 13, 2025 · 3.9.0

• Join mismatch/DataflowVariable assignment error

  bug
  nf-core/sarek#1790 · Filter by author ellisjj opened on Feb 3, 2025 · 3.9.0
  6

• Use nft-csv to better test csv files

  enhancement
  nf-core/sarek#1958 · Filter by author maxulysse opened on Aug 19, 2025 · 3.9.0

• Deepvariant requires additional cli option for recalibrated BAM files

  bug
  nf-core/sarek#682 · Filter by author marchoeppner opened on Jul 22, 2022 · 3.9.0
  

• feat: Add linting of FASTQ with FQ/LINT

  Unread
  nf-core/sarek#1763·adamrtalbot opened Dec 17, 2024 · Updated Feb 9, 2026
  6

• Please add VEP plugins (Conservation and Condel)

  enhancement
  nf-core/sarek#1549 · Filter by author andrew2k opened on May 30, 2024 · 3.9.0
  1

• Revise ASCAT resource generation instructions

  Unread
  nf-core/sarek#2135·CharlesARoy opened Feb 10, 2026 · Updated Feb 11, 2026
  1