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modules.json
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{
"name": "nf-core/scnanoseq",
"homePage": "https://github.com/nf-core/scnanoseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bamtools/split": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "9437e6053dccf4aafa022bfd6e7e9de67e625af8",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "0997b47c93c06b49aa7b3fefda87e728312cf2ca",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "de45447d060b8c8b98575bc637a4a575fd0638e1",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "dc94b6ee04a05ddb9f7ae050712ff30a13149164",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "a33ef9475558c6b8da08c5f522ddaca1ec810306",
"installed_by": ["modules"]
},
"minimap2/index": {
"branch": "master",
"git_sha": "72e277acfd9e61a9f1368eafb4a9e83f5bcaa9f5",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/index/minimap2-index.diff"
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"nanocomp": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"patch": "modules/nf-core/nanocomp/nanocomp.diff"
},
"nanoplot": {
"branch": "master",
"git_sha": "a31407dfaf0cb0d04768d5cb439fc6f4523a6981",
"installed_by": ["modules"],
"patch": "modules/nf-core/nanoplot/nanoplot.diff"
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"]
},
"pigz/compress": {
"branch": "master",
"git_sha": "c00055a0b13d622b4f1f51a8e5be31deaf99ded7",
"installed_by": ["modules"]
},
"pigz/uncompress": {
"branch": "master",
"git_sha": "c00055a0b13d622b4f1f51a8e5be31deaf99ded7",
"installed_by": ["modules"],
"patch": "modules/nf-core/pigz/uncompress/pigz-uncompress.diff"
},
"rseqc/readdistribution": {
"branch": "master",
"git_sha": "6c7d8f1d6247655e4bc4d97f37b68b2461f645f6",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "aeb02a39d4c463598bfdcb2d964dbb7acbcf1298",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/view": {
"branch": "master",
"git_sha": "0bd7d2333a88483aa0476acea172e9f5f6dd83bb",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/view/samtools-view.diff"
},
"toulligqc": {
"branch": "master",
"git_sha": "061a322293b3487e53f044304710e54cbf657717",
"installed_by": ["modules"],
"patch": "modules/nf-core/toulligqc/toulligqc.diff"
},
"umitools/dedup": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b89f75f1aa2021ec3360d0deccd0f6e97240551",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}