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modules.json
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{
"name": "nf-core/scrnaseq",
"homePage": "https://github.com/nf-core/scrnaseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"anndata/barcodes": {
"branch": "master",
"git_sha": "05e4d643e8a9cd600fdce51dccdfc68cf9a72489",
"installed_by": ["h5ad_removebackground_barcodes_cellbender_anndata"]
},
"cellbender/removebackground": {
"branch": "master",
"git_sha": "e01435f46b46adff59546d6a4b4002e31f6c4457",
"installed_by": ["h5ad_removebackground_barcodes_cellbender_anndata", "modules"]
},
"cellranger/count": {
"branch": "master",
"git_sha": "90dad5491658049282ceb287a3d7732c1ce39837",
"installed_by": ["modules"]
},
"cellranger/mkgtf": {
"branch": "master",
"git_sha": "90dad5491658049282ceb287a3d7732c1ce39837",
"installed_by": ["modules"]
},
"cellranger/mkref": {
"branch": "master",
"git_sha": "3549a361ce3401b6afd238a266389d78392a53f6",
"installed_by": ["modules"]
},
"cellranger/mkvdjref": {
"branch": "master",
"git_sha": "e66183d2ab6a5c2f3fd66b2bee942287cf65536c",
"installed_by": ["modules"]
},
"cellranger/multi": {
"branch": "master",
"git_sha": "90dad5491658049282ceb287a3d7732c1ce39837",
"installed_by": ["modules"]
},
"cellrangerarc/count": {
"branch": "master",
"git_sha": "18e53e27cfeca5dbbfbeee675c05438dec68245f",
"installed_by": ["modules"]
},
"cellrangerarc/mkgtf": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"cellrangerarc/mkref": {
"branch": "master",
"git_sha": "3549a361ce3401b6afd238a266389d78392a53f6",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "08108058ea36a63f141c25c4e75f9f872a5b2296",
"installed_by": ["modules"]
},
"gffread": {
"branch": "master",
"git_sha": "b1b959609bda44341120aed1766329909f54b8d0",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
"installed_by": ["modules"]
},
"kallistobustools/count": {
"branch": "master",
"git_sha": "53c2b466994f07def210b7f4cc866bb5a8a2cb92",
"installed_by": ["modules"]
},
"kallistobustools/ref": {
"branch": "master",
"git_sha": "de8215983defba48cd81961d620a9e844f11c7e7",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "f0719ae309075ae4a291533883847c3f7c441dad",
"installed_by": ["modules"]
},
"simpleaf/index": {
"branch": "master",
"git_sha": "4ce8f451b1c44e02f5846b39276f5c501ca199ac",
"installed_by": ["modules"]
},
"simpleaf/quant": {
"branch": "master",
"git_sha": "4ce8f451b1c44e02f5846b39276f5c501ca199ac",
"installed_by": ["modules"]
},
"star/genomegenerate": {
"branch": "master",
"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
"installed_by": ["modules"]
},
"unzip": {
"branch": "master",
"git_sha": "b0c3ff2485534c09d9debbf20125d9c6b72ce118",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"h5ad_removebackground_barcodes_cellbender_anndata": {
"branch": "master",
"git_sha": "23600f6cd1c7fc4da79709bb531e5ba3cd5e840e",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}