diff --git a/modules/nf-core/fastqscreen/fastqscreen/main.nf b/modules/nf-core/fastqscreen/fastqscreen/main.nf index eab5afb..5037db6 100644 --- a/modules/nf-core/fastqscreen/fastqscreen/main.nf +++ b/modules/nf-core/fastqscreen/fastqscreen/main.nf @@ -8,8 +8,8 @@ process FASTQSCREEN_FASTQSCREEN { 'community.wave.seqera.io/library/fastq-screen_perl-gdgraph:5c1786a5d5bc1309'}" input: - tuple val(meta), path(reads) // .fastq files - tuple val(meta2), path(database) // [[database_name, database_notes], database_path] + // NOTE for meta 2 and database [[database_name, database_notes], database_path] + tuple val(meta), path(reads), val(meta2), path(database) output: tuple val(meta), path("*.txt") , emit: txt diff --git a/workflows/seqinspector.nf b/workflows/seqinspector.nf index ad6dc2c..75ea2d6 100644 --- a/workflows/seqinspector.nf +++ b/workflows/seqinspector.nf @@ -51,8 +51,7 @@ workflow SEQINSPECTOR { .fromList(samplesheetToList(ch_databasesheet, "${projectDir}/assets/schema_database.json")) FASTQSCREEN_FASTQSCREEN ( - ch_samplesheet, - ch_databases, + ch_samplesheet.combine(ch_databases) ) ch_multiqc_files = ch_multiqc_files.mix(FASTQSCREEN_FASTQSCREEN.out.txt) ch_versions = ch_versions.mix(FASTQSCREEN_FASTQSCREEN.out.versions.first())