From a60d5738e5dc953c5a41574b18326640e628c60c Mon Sep 17 00:00:00 2001 From: ctuni Date: Wed, 30 Oct 2024 12:15:45 +0100 Subject: [PATCH] removed default database for a null one --- nextflow.config | 2 +- nextflow_schema.json | 5 ++--- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/nextflow.config b/nextflow.config index 7d9560c..20069a3 100644 --- a/nextflow.config +++ b/nextflow.config @@ -20,7 +20,7 @@ params { igenomes_ignore = false // Kraken2 options - kraken2_db = 'https://github.com/nf-core/test-datasets/raw/taxprofiler/data/database/kraken2/testdb-kraken2.tar.gz' + kraken2_db = null kraken2_save_reads = false kraken2_save_readclassifications = false save_uncompressed_k2db = false diff --git a/nextflow_schema.json b/nextflow_schema.json index da27d88..f5340c5 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -95,9 +95,8 @@ "type": "string", "exists": true, "mimetype": "text/plain", - "help_text": "Path to Kraken2 database file, built with kraken2 build", - "fa_icon": "fas fa-database", - "default": "https://github.com/nf-core/test-datasets/raw/taxprofiler/data/database/kraken2/testdb-kraken2.tar.gz" + "description": "Path to Kraken2 database file, either a gzipped file or the path to the uncompressed database.", + "fa_icon": "fas fa-database" }, "igenomes_base": { "type": "string",