Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Improve documentation on longitudinal option. #306

Open
bpinsard opened this issue Oct 18, 2022 · 1 comment
Open

Improve documentation on longitudinal option. #306

bpinsard opened this issue Oct 18, 2022 · 1 comment

Comments

@bpinsard
Copy link
Contributor

Please describe how the documentation should be improved.
I recently ran smriprep with the longitudinal option, and I thought it would run freesurfer longitudinal full pipeline until I got the results.
Now I understand that it's only in the robust template creation that it makes a difference.
I think it would be great to expand a bit the documentation on that option to mention what it changes in the workflow.

I also wonder if a precomputed longitudinal freesurfer could be used as input for smriprep/fmriprep?

@effigies
Copy link
Member

Maybe we should link to https://fmriprep.org/en/stable/workflows.html#longitudinal-processing in the CLI outputs? I'm not sure what else to say.

And #21 is a long-standing issue. If someone with experience working with longitudinal FreeSurfer data is willing to contribute the necessary patches, then we can support it. I don't know enough to know what that would look like.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants