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I'm walking through miykael's tutorial and found the output of mcflirt could not be correctly recognized:
FileNotFoundError: No such file or directory '/xxx/working_dir/preprocWF/mcflirt/sub-01_ses-test_task-fingerfootlips_bold_mcf_mean_reg.nii.gz' for output 'mean_img' of a MCFLIRT interface
and the real output name of mcflirt was sub-01_ses-test_task-fingerfootlips_bold_mcf.nii.gz_mean_reg.nii.gz.
I think this issue should have been resolved after referring to a previous commit.
By simply replacing this line with the hardcoded path of the output file, the workflow finished without any error.
I don't know if this pattern of filename (.nii.gz_mean_reg.nii.gz) shouldn't appear in FLS 6, or there's something wrong on nipype side?
Summary
I'm walking through miykael's tutorial and found the output of mcflirt could not be correctly recognized:
and the real output name of mcflirt was
sub-01_ses-test_task-fingerfootlips_bold_mcf.nii.gz_mean_reg.nii.gz
.I think this issue should have been resolved after referring to a previous commit.
By simply replacing this line with the hardcoded path of the output file, the workflow finished without any error.
I don't know if this pattern of filename (.nii.gz_mean_reg.nii.gz) shouldn't appear in FLS 6, or there's something wrong on nipype side?
Platform details:
Execution environment
FSL: 6.0.7.13
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