From 1a61b9348bb27d9aaa315a953e9a99d0d314eef3 Mon Sep 17 00:00:00 2001 From: "Thomas G. Close" Date: Wed, 17 Sep 2025 23:18:01 +1000 Subject: [PATCH 1/2] renamed references to pydra-* to pydra-tasks-* --- .github/workflows/ci-cd.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-cd.yaml b/.github/workflows/ci-cd.yaml index 8c02c1c..c05e84b 100644 --- a/.github/workflows/ci-cd.yaml +++ b/.github/workflows/ci-cd.yaml @@ -72,7 +72,7 @@ jobs: git clone https://github.com/tclose/mrtrix3.git $MRTRIX_HOME/src cd $MRTRIX_HOME/src git checkout print-pydra-dev - git tag -a $MRTRIX_VERSION -m"Tag used to create a pydra-task-mrtrix3 release" + git tag -a $MRTRIX_VERSION -m"Tag used to create a pydra-tasks-mrtrix3 release" git describe --abbrev=0 # echo "MRTRIX_VERSION=$(git describe --tags --abbrev=0)" >> $GITHUB_ENV # git checkout $MRTRIX_VERSION From 8aebf7976e77f2372e0df28910bfeff694a8b6ed Mon Sep 17 00:00:00 2001 From: "Thomas G. Close" Date: Mon, 13 Oct 2025 14:04:01 +1100 Subject: [PATCH 2/2] moved fileformats package under vendor --- docs/requirements.txt | 4 ++-- generate.py | 4 ++-- pydra/tasks/mrtrix3/manual/mrcalc.py | 2 +- pydra/tasks/mrtrix3/v3_1/afdconnectivity.py | 2 +- pydra/tasks/mrtrix3/v3_1/amp2response.py | 2 +- pydra/tasks/mrtrix3/v3_1/amp2sh.py | 2 +- pydra/tasks/mrtrix3/v3_1/connectome2tck.py | 2 +- pydra/tasks/mrtrix3/v3_1/connectomeedit.py | 2 +- pydra/tasks/mrtrix3/v3_1/connectomestats.py | 2 +- pydra/tasks/mrtrix3/v3_1/dcmedit.py | 2 +- pydra/tasks/mrtrix3/v3_1/dcminfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/dirflip.py | 2 +- pydra/tasks/mrtrix3/v3_1/dirgen.py | 2 +- pydra/tasks/mrtrix3/v3_1/dirmerge.py | 2 +- pydra/tasks/mrtrix3/v3_1/dirorder.py | 2 +- pydra/tasks/mrtrix3/v3_1/dirrotate.py | 2 +- pydra/tasks/mrtrix3/v3_1/dirsplit.py | 2 +- pydra/tasks/mrtrix3/v3_1/dirstat.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2adc.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2fod.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwi2tensor.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwicat.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwidenoise.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwiextract.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwigradcheck.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py | 2 +- pydra/tasks/mrtrix3/v3_1/dwishellmath.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivett2gmwmi.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivett2vis.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivettcheck.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivettedit.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py | 2 +- pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixel2peaks.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixel2sh.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixel2tsf.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixel2voxel.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixelcfestats.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixelconnectivity.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixelconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixelcorrespondence.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixelcrop.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixelfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/fixelreorient.py | 2 +- pydra/tasks/mrtrix3/v3_1/fod2dec.py | 2 +- pydra/tasks/mrtrix3/v3_1/fod2fixel.py | 2 +- pydra/tasks/mrtrix3/v3_1/label2colour.py | 2 +- pydra/tasks/mrtrix3/v3_1/label2mesh.py | 2 +- pydra/tasks/mrtrix3/v3_1/labelconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py | 2 +- pydra/tasks/mrtrix3/v3_1/labelstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/mask2glass.py | 2 +- pydra/tasks/mrtrix3/v3_1/maskdump.py | 2 +- pydra/tasks/mrtrix3/v3_1/maskfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/mesh2voxel.py | 2 +- pydra/tasks/mrtrix3/v3_1/meshconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/meshfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/mraverageheader.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrcat.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrcentroid.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrcheckerboardmask.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrclusterstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrcolour.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrdegibbs.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrdump.py | 2 +- pydra/tasks/mrtrix3/v3_1/mredit.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrgrid.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrhistmatch.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrhistogram.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrinfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrmath.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrmetric.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrregister.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrthreshold.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrtransform.py | 2 +- pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py | 2 +- pydra/tasks/mrtrix3/v3_1/mtnormalise.py | 2 +- pydra/tasks/mrtrix3/v3_1/peaks2amp.py | 2 +- pydra/tasks/mrtrix3/v3_1/peaks2fixel.py | 2 +- pydra/tasks/mrtrix3/v3_1/population_template.py | 2 +- pydra/tasks/mrtrix3/v3_1/responsemean.py | 2 +- pydra/tasks/mrtrix3/v3_1/sh2amp.py | 2 +- pydra/tasks/mrtrix3/v3_1/sh2peaks.py | 2 +- pydra/tasks/mrtrix3/v3_1/sh2power.py | 2 +- pydra/tasks/mrtrix3/v3_1/sh2response.py | 2 +- pydra/tasks/mrtrix3/v3_1/shbasis.py | 2 +- pydra/tasks/mrtrix3/v3_1/shconv.py | 2 +- pydra/tasks/mrtrix3/v3_1/tck2connectome.py | 2 +- pydra/tasks/mrtrix3/v3_1/tck2fixel.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckdfc.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckedit.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckgen.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckglobal.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckinfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckmap.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckresample.py | 2 +- pydra/tasks/mrtrix3/v3_1/tcksample.py | 2 +- pydra/tasks/mrtrix3/v3_1/tcksift.py | 2 +- pydra/tasks/mrtrix3/v3_1/tcksift2.py | 2 +- pydra/tasks/mrtrix3/v3_1/tckstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tcktransform.py | 2 +- pydra/tasks/mrtrix3/v3_1/tensor2metric.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_afdconnectivity.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_amp2response.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_amp2sh.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_connectome2tck.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_connectomeedit.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_connectomestats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dcmedit.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dcminfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dirflip.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dirgen.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dirmerge.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dirorder.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dirrotate.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dirsplit.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dirstat.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2adc.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2fod.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_dwi2mask_3dautomask.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_ants.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_dwi2mask_b02template.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_consensus.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_fslbet.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_hdbet.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_legacy.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mean.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mtnorm.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_dwi2mask_synthstrip.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_trace.py | 2 +- .../mrtrix3/v3_1/tests/test_dwi2response_dhollander.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_fa.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_dwi2response_manual.py | 2 +- .../mrtrix3/v3_1/tests/test_dwi2response_msmt_5tt.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tax.py | 2 +- .../mrtrix3/v3_1/tests/test_dwi2response_tournier.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwi2tensor.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_ants.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_fsl.py | 2 +- .../mrtrix3/v3_1/tests/test_dwibiascorrect_mtnorm.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwibiasnormmask.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwicat.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwidenoise.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwiextract.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwifslpreproc.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwigradcheck.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_group.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_dwinormalise_manual.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_dwinormalise_mtnorm.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_dwishellmath.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fivett2gmwmi.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fivett2vis.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fivettcheck.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fivettedit.py | 2 +- .../mrtrix3/v3_1/tests/test_fivettgen_deep_atropos.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_fivettgen_freesurfer.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_fsl.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_gif.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_hsvs.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixel2peaks.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixel2sh.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixel2tsf.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixel2voxel.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixelcfestats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixelconnectivity.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixelconvert.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_fixelcorrespondence.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixelcrop.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixelfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fixelreorient.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fod2dec.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_fod2fixel.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_label2colour.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_label2mesh.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_labelconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_labelsgmfirst.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_labelstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mask2glass.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_maskdump.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_maskfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mesh2voxel.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_meshconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_meshfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mraverageheader.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrcat.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrcentroid.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrcheckerboardmask.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrclusterstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrcolour.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrdegibbs.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrdump.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mredit.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrfilter.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrgrid.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrhistmatch.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrhistogram.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrinfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrmath.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrmetric.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrregister.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrthreshold.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrtransform.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mrtrix_cleanup.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_mtnormalise.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_peaks2amp.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_peaks2fixel.py | 2 +- .../tasks/mrtrix3/v3_1/tests/test_population_template.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_responsemean.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_sh2amp.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_sh2peaks.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_sh2power.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_sh2response.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_shbasis.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_shconv.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tck2connectome.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tck2fixel.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckdfc.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckedit.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckgen.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckglobal.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckinfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckmap.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckresample.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tcksample.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tcksift.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tcksift2.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tckstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tcktransform.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tensor2metric.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_transformcalc.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_transformcompose.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_transformconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tsfdivide.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tsfinfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tsfmult.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tsfsmooth.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tsfthreshold.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_tsfvalidate.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_vectorstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_voxel2fixel.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_voxel2mesh.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_warp2metric.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_warpconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_warpcorrect.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_warpinit.py | 2 +- pydra/tasks/mrtrix3/v3_1/tests/test_warpinvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/transformcalc.py | 2 +- pydra/tasks/mrtrix3/v3_1/transformcompose.py | 2 +- pydra/tasks/mrtrix3/v3_1/transformconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/tsfdivide.py | 2 +- pydra/tasks/mrtrix3/v3_1/tsfinfo.py | 2 +- pydra/tasks/mrtrix3/v3_1/tsfmult.py | 2 +- pydra/tasks/mrtrix3/v3_1/tsfsmooth.py | 2 +- pydra/tasks/mrtrix3/v3_1/tsfthreshold.py | 2 +- pydra/tasks/mrtrix3/v3_1/tsfvalidate.py | 2 +- pydra/tasks/mrtrix3/v3_1/vectorstats.py | 2 +- pydra/tasks/mrtrix3/v3_1/voxel2fixel.py | 2 +- pydra/tasks/mrtrix3/v3_1/voxel2mesh.py | 2 +- pydra/tasks/mrtrix3/v3_1/warp2metric.py | 2 +- pydra/tasks/mrtrix3/v3_1/warpconvert.py | 2 +- pydra/tasks/mrtrix3/v3_1/warpcorrect.py | 2 +- pydra/tasks/mrtrix3/v3_1/warpinit.py | 2 +- pydra/tasks/mrtrix3/v3_1/warpinvert.py | 2 +- .../mrtrix3/medimage}/__init__.py | 2 +- .../mrtrix3/medimage}/converters.py | 2 +- .../mrtrix3/medimage}/gradients.py | 2 +- .../mrtrix3/medimage}/image.py | 2 +- .../mrtrix3/medimage}/tests/test_converters.py | 2 +- .../mrtrix3/medimage}/tracks.py | 2 +- related-packages/fileformats-extras/pyproject.toml | 8 ++++---- .../mrtrix3/medimage}/__init__.py | 2 +- .../{medimage_mrtrix3 => vendor/mrtrix3/medimage}/dwi.py | 0 .../mrtrix3/medimage}/image.py | 0 .../mrtrix3/medimage}/in_out.py | 0 .../mrtrix3/medimage}/tests/test_mime.py | 2 +- .../mrtrix3/medimage}/track.py | 0 related-packages/fileformats/pyproject.toml | 6 +++--- 311 files changed, 314 insertions(+), 314 deletions(-) rename related-packages/fileformats-extras/fileformats/extras/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/__init__.py (72%) rename related-packages/fileformats-extras/fileformats/extras/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/converters.py (95%) rename related-packages/fileformats-extras/fileformats/extras/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/gradients.py (88%) rename related-packages/fileformats-extras/fileformats/extras/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/image.py (95%) rename related-packages/fileformats-extras/fileformats/extras/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/tests/test_converters.py (88%) rename related-packages/fileformats-extras/fileformats/extras/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/tracks.py (95%) rename related-packages/fileformats/fileformats/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/__init__.py (94%) rename related-packages/fileformats/fileformats/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/dwi.py (100%) rename related-packages/fileformats/fileformats/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/image.py (100%) rename related-packages/fileformats/fileformats/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/in_out.py (100%) rename related-packages/fileformats/fileformats/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/tests/test_mime.py (74%) rename related-packages/fileformats/fileformats/{medimage_mrtrix3 => vendor/mrtrix3/medimage}/track.py (100%) diff --git a/docs/requirements.txt b/docs/requirements.txt index 6743c88..50430a9 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -6,5 +6,5 @@ fileformats >= 0.8 fileformats-extras >= 0.2.1 fileformats-medimage >= 0.4.4 fileformats-medimage-extras >= 0.1.5 -fileformats-medimage-mrtrix3 -fileformats-medimage-mrtrix3-extras +fileformats-vendor-mrtrix3 +fileformats-vendor-mrtrix3-extras diff --git a/generate.py b/generate.py index 2eb7958..a9efc57 100755 --- a/generate.py +++ b/generate.py @@ -14,7 +14,7 @@ import black.report import black.parsing from fileformats.core import FileSet -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, ImageOut, Tracks +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, ImageOut, Tracks from pydra.compose import shell from pydra.compose.base import NO_DEFAULT from pydra.utils.typing import MultiInputObj @@ -323,7 +323,7 @@ def auto_gen_test(cmd_name: str, output_dir: Path, log_errors: bool, pkg_version import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.{pkg_version} import {pascal_case_task_name(cmd_name)} """ diff --git a/pydra/tasks/mrtrix3/manual/mrcalc.py b/pydra/tasks/mrtrix3/manual/mrcalc.py index 51b4cac..bb15264 100644 --- a/pydra/tasks/mrtrix3/manual/mrcalc.py +++ b/pydra/tasks/mrtrix3/manual/mrcalc.py @@ -2,7 +2,7 @@ from pathlib import Path # noqa: F401 from enum import Enum from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/afdconnectivity.py b/pydra/tasks/mrtrix3/v3_1/afdconnectivity.py index 574f9a3..db5df50 100644 --- a/pydra/tasks/mrtrix3/v3_1/afdconnectivity.py +++ b/pydra/tasks/mrtrix3/v3_1/afdconnectivity.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/amp2response.py b/pydra/tasks/mrtrix3/v3_1/amp2response.py index 2029ea1..38f5c89 100644 --- a/pydra/tasks/mrtrix3/v3_1/amp2response.py +++ b/pydra/tasks/mrtrix3/v3_1/amp2response.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/amp2sh.py b/pydra/tasks/mrtrix3/v3_1/amp2sh.py index 6d4ac01..036a108 100644 --- a/pydra/tasks/mrtrix3/v3_1/amp2sh.py +++ b/pydra/tasks/mrtrix3/v3_1/amp2sh.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/connectome2tck.py b/pydra/tasks/mrtrix3/v3_1/connectome2tck.py index e5d6c22..e317ccd 100644 --- a/pydra/tasks/mrtrix3/v3_1/connectome2tck.py +++ b/pydra/tasks/mrtrix3/v3_1/connectome2tck.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/connectomeedit.py b/pydra/tasks/mrtrix3/v3_1/connectomeedit.py index b726c66..fbe16c1 100644 --- a/pydra/tasks/mrtrix3/v3_1/connectomeedit.py +++ b/pydra/tasks/mrtrix3/v3_1/connectomeedit.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/connectomestats.py b/pydra/tasks/mrtrix3/v3_1/connectomestats.py index 6637f3a..c2ae916 100644 --- a/pydra/tasks/mrtrix3/v3_1/connectomestats.py +++ b/pydra/tasks/mrtrix3/v3_1/connectomestats.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dcmedit.py b/pydra/tasks/mrtrix3/v3_1/dcmedit.py index 957af3c..f1805d9 100644 --- a/pydra/tasks/mrtrix3/v3_1/dcmedit.py +++ b/pydra/tasks/mrtrix3/v3_1/dcmedit.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dcminfo.py b/pydra/tasks/mrtrix3/v3_1/dcminfo.py index bee2daf..8f4932d 100644 --- a/pydra/tasks/mrtrix3/v3_1/dcminfo.py +++ b/pydra/tasks/mrtrix3/v3_1/dcminfo.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dirflip.py b/pydra/tasks/mrtrix3/v3_1/dirflip.py index 0a98d4f..44213c0 100644 --- a/pydra/tasks/mrtrix3/v3_1/dirflip.py +++ b/pydra/tasks/mrtrix3/v3_1/dirflip.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dirgen.py b/pydra/tasks/mrtrix3/v3_1/dirgen.py index 75e3a7f..eb5b31b 100644 --- a/pydra/tasks/mrtrix3/v3_1/dirgen.py +++ b/pydra/tasks/mrtrix3/v3_1/dirgen.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dirmerge.py b/pydra/tasks/mrtrix3/v3_1/dirmerge.py index 8faec57..4eb9a07 100644 --- a/pydra/tasks/mrtrix3/v3_1/dirmerge.py +++ b/pydra/tasks/mrtrix3/v3_1/dirmerge.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dirorder.py b/pydra/tasks/mrtrix3/v3_1/dirorder.py index 6acc7c4..34f571f 100644 --- a/pydra/tasks/mrtrix3/v3_1/dirorder.py +++ b/pydra/tasks/mrtrix3/v3_1/dirorder.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dirrotate.py b/pydra/tasks/mrtrix3/v3_1/dirrotate.py index 44d7220..67df2e3 100644 --- a/pydra/tasks/mrtrix3/v3_1/dirrotate.py +++ b/pydra/tasks/mrtrix3/v3_1/dirrotate.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dirsplit.py b/pydra/tasks/mrtrix3/v3_1/dirsplit.py index 2dfe0d5..60f1272 100644 --- a/pydra/tasks/mrtrix3/v3_1/dirsplit.py +++ b/pydra/tasks/mrtrix3/v3_1/dirsplit.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dirstat.py b/pydra/tasks/mrtrix3/v3_1/dirstat.py index 6b4bdfe..3958012 100644 --- a/pydra/tasks/mrtrix3/v3_1/dirstat.py +++ b/pydra/tasks/mrtrix3/v3_1/dirstat.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2adc.py b/pydra/tasks/mrtrix3/v3_1/dwi2adc.py index 331ffba..c9c4c82 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2adc.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2adc.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2fod.py b/pydra/tasks/mrtrix3/v3_1/dwi2fod.py index 94cea13..6e4995a 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2fod.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2fod.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py index 3f77f2b..2d1a83a 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py index 12d2d5a..5de3130 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py index 3d4cf40..9519cef 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py index a1ef67d..dd9fa57 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py index 34e237b..e5e5f86 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py index 724ed65..e02572a 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py index bf7a11f..4be92cd 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py index d9dad56..02019e9 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py index 69c6e3b..16e2c57 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py index 1d7d409..7a508d6 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py index a5c30e7..43e0c78 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py index 2ace87a..c028174 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py index c0a6de2..6d280f2 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py index f553ed4..3a8fd6f 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py index dc1ef0a..c279ea0 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py index 99fd44e..5a31201 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py index b95046b..3ef7053 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2tensor.py b/pydra/tasks/mrtrix3/v3_1/dwi2tensor.py index fcca438..0670692 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2tensor.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2tensor.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py index 28887ac..d3ccb25 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py index 2114ca8..c14f6ee 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py index 558402b..8f1611d 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py b/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py index fec9cef..adfd701 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwicat.py b/pydra/tasks/mrtrix3/v3_1/dwicat.py index b4eb6e3..432c202 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwicat.py +++ b/pydra/tasks/mrtrix3/v3_1/dwicat.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwidenoise.py b/pydra/tasks/mrtrix3/v3_1/dwidenoise.py index a84c294..bcd5c72 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwidenoise.py +++ b/pydra/tasks/mrtrix3/v3_1/dwidenoise.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dwiextract.py b/pydra/tasks/mrtrix3/v3_1/dwiextract.py index bcd9a1f..0adeb6b 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwiextract.py +++ b/pydra/tasks/mrtrix3/v3_1/dwiextract.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py b/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py index aaf98ad..630b907 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py +++ b/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py b/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py index da889ac..ed2b813 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py +++ b/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py b/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py index ec91be5..1e0cc54 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py +++ b/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py b/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py index 16aa2fa..8538a8f 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py +++ b/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py index c5cbbf2..478a0fa 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/dwishellmath.py b/pydra/tasks/mrtrix3/v3_1/dwishellmath.py index 18dbe5a..a000e1e 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwishellmath.py +++ b/pydra/tasks/mrtrix3/v3_1/dwishellmath.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/fivett2gmwmi.py b/pydra/tasks/mrtrix3/v3_1/fivett2gmwmi.py index 5704da8..7cb5e49 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivett2gmwmi.py +++ b/pydra/tasks/mrtrix3/v3_1/fivett2gmwmi.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fivett2vis.py b/pydra/tasks/mrtrix3/v3_1/fivett2vis.py index 079966e..1f5c74e 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivett2vis.py +++ b/pydra/tasks/mrtrix3/v3_1/fivett2vis.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fivettcheck.py b/pydra/tasks/mrtrix3/v3_1/fivettcheck.py index 0f5a7a6..9a58693 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettcheck.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettcheck.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fivettedit.py b/pydra/tasks/mrtrix3/v3_1/fivettedit.py index cc5f4bb..84897de 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettedit.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettedit.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py index dbad818..d9bf687 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py index 3dd6fcc..cae4c55 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py index 8f4f878..b9fc897 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py index f6804b9..b1a6d85 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py index f7dac63..95c934c 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/fixel2peaks.py b/pydra/tasks/mrtrix3/v3_1/fixel2peaks.py index 83336dc..88399cd 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixel2peaks.py +++ b/pydra/tasks/mrtrix3/v3_1/fixel2peaks.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixel2sh.py b/pydra/tasks/mrtrix3/v3_1/fixel2sh.py index 4da23d7..f5cff8c 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixel2sh.py +++ b/pydra/tasks/mrtrix3/v3_1/fixel2sh.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixel2tsf.py b/pydra/tasks/mrtrix3/v3_1/fixel2tsf.py index d77044e..3235cb7 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixel2tsf.py +++ b/pydra/tasks/mrtrix3/v3_1/fixel2tsf.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixel2voxel.py b/pydra/tasks/mrtrix3/v3_1/fixel2voxel.py index 07f577c..d2e8a02 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixel2voxel.py +++ b/pydra/tasks/mrtrix3/v3_1/fixel2voxel.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixelcfestats.py b/pydra/tasks/mrtrix3/v3_1/fixelcfestats.py index 5f111fd..b7b728b 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixelcfestats.py +++ b/pydra/tasks/mrtrix3/v3_1/fixelcfestats.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixelconnectivity.py b/pydra/tasks/mrtrix3/v3_1/fixelconnectivity.py index b431da9..d573b49 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixelconnectivity.py +++ b/pydra/tasks/mrtrix3/v3_1/fixelconnectivity.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixelconvert.py b/pydra/tasks/mrtrix3/v3_1/fixelconvert.py index 1e96811..7f5e25d 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixelconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/fixelconvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixelcorrespondence.py b/pydra/tasks/mrtrix3/v3_1/fixelcorrespondence.py index 4431c3c..ff9a534 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixelcorrespondence.py +++ b/pydra/tasks/mrtrix3/v3_1/fixelcorrespondence.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixelcrop.py b/pydra/tasks/mrtrix3/v3_1/fixelcrop.py index 46d0139..c697c1b 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixelcrop.py +++ b/pydra/tasks/mrtrix3/v3_1/fixelcrop.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixelfilter.py b/pydra/tasks/mrtrix3/v3_1/fixelfilter.py index 619d67b..d7e13ea 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixelfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/fixelfilter.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fixelreorient.py b/pydra/tasks/mrtrix3/v3_1/fixelreorient.py index d08961c..233c604 100644 --- a/pydra/tasks/mrtrix3/v3_1/fixelreorient.py +++ b/pydra/tasks/mrtrix3/v3_1/fixelreorient.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fod2dec.py b/pydra/tasks/mrtrix3/v3_1/fod2dec.py index 4462905..25c7d97 100644 --- a/pydra/tasks/mrtrix3/v3_1/fod2dec.py +++ b/pydra/tasks/mrtrix3/v3_1/fod2dec.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/fod2fixel.py b/pydra/tasks/mrtrix3/v3_1/fod2fixel.py index eab5f8e..e3c6fcf 100644 --- a/pydra/tasks/mrtrix3/v3_1/fod2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/fod2fixel.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/label2colour.py b/pydra/tasks/mrtrix3/v3_1/label2colour.py index 2f8317d..3192aea 100644 --- a/pydra/tasks/mrtrix3/v3_1/label2colour.py +++ b/pydra/tasks/mrtrix3/v3_1/label2colour.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/label2mesh.py b/pydra/tasks/mrtrix3/v3_1/label2mesh.py index b599a5c..8971585 100644 --- a/pydra/tasks/mrtrix3/v3_1/label2mesh.py +++ b/pydra/tasks/mrtrix3/v3_1/label2mesh.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/labelconvert.py b/pydra/tasks/mrtrix3/v3_1/labelconvert.py index 423f970..1fba9e6 100644 --- a/pydra/tasks/mrtrix3/v3_1/labelconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/labelconvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py b/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py index 208e2cf..fee55a3 100644 --- a/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py +++ b/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/labelstats.py b/pydra/tasks/mrtrix3/v3_1/labelstats.py index f507d49..2f90861 100644 --- a/pydra/tasks/mrtrix3/v3_1/labelstats.py +++ b/pydra/tasks/mrtrix3/v3_1/labelstats.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mask2glass.py b/pydra/tasks/mrtrix3/v3_1/mask2glass.py index 50a96a7..1b6fa0f 100644 --- a/pydra/tasks/mrtrix3/v3_1/mask2glass.py +++ b/pydra/tasks/mrtrix3/v3_1/mask2glass.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/maskdump.py b/pydra/tasks/mrtrix3/v3_1/maskdump.py index 25f70b1..65952b7 100644 --- a/pydra/tasks/mrtrix3/v3_1/maskdump.py +++ b/pydra/tasks/mrtrix3/v3_1/maskdump.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/maskfilter.py b/pydra/tasks/mrtrix3/v3_1/maskfilter.py index adcb20b..89a8cce 100644 --- a/pydra/tasks/mrtrix3/v3_1/maskfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/maskfilter.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mesh2voxel.py b/pydra/tasks/mrtrix3/v3_1/mesh2voxel.py index a3e7776..3f25201 100644 --- a/pydra/tasks/mrtrix3/v3_1/mesh2voxel.py +++ b/pydra/tasks/mrtrix3/v3_1/mesh2voxel.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/meshconvert.py b/pydra/tasks/mrtrix3/v3_1/meshconvert.py index 2f4620e..26d542c 100644 --- a/pydra/tasks/mrtrix3/v3_1/meshconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/meshconvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/meshfilter.py b/pydra/tasks/mrtrix3/v3_1/meshfilter.py index c1fa8ae..6867d37 100644 --- a/pydra/tasks/mrtrix3/v3_1/meshfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/meshfilter.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mraverageheader.py b/pydra/tasks/mrtrix3/v3_1/mraverageheader.py index 5e6da6e..8cc026b 100644 --- a/pydra/tasks/mrtrix3/v3_1/mraverageheader.py +++ b/pydra/tasks/mrtrix3/v3_1/mraverageheader.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrcat.py b/pydra/tasks/mrtrix3/v3_1/mrcat.py index 0acfd4b..8124ef3 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrcat.py +++ b/pydra/tasks/mrtrix3/v3_1/mrcat.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrcentroid.py b/pydra/tasks/mrtrix3/v3_1/mrcentroid.py index 1ede880..7047a1d 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrcentroid.py +++ b/pydra/tasks/mrtrix3/v3_1/mrcentroid.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrcheckerboardmask.py b/pydra/tasks/mrtrix3/v3_1/mrcheckerboardmask.py index bd17325..6eb40eb 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrcheckerboardmask.py +++ b/pydra/tasks/mrtrix3/v3_1/mrcheckerboardmask.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrclusterstats.py b/pydra/tasks/mrtrix3/v3_1/mrclusterstats.py index 65d8361..959f4ea 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrclusterstats.py +++ b/pydra/tasks/mrtrix3/v3_1/mrclusterstats.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrcolour.py b/pydra/tasks/mrtrix3/v3_1/mrcolour.py index c36588b..8d49b24 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrcolour.py +++ b/pydra/tasks/mrtrix3/v3_1/mrcolour.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrconvert.py b/pydra/tasks/mrtrix3/v3_1/mrconvert.py index a8736bc..03c8c5e 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/mrconvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrdegibbs.py b/pydra/tasks/mrtrix3/v3_1/mrdegibbs.py index 86be0d3..b874dc0 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrdegibbs.py +++ b/pydra/tasks/mrtrix3/v3_1/mrdegibbs.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrdump.py b/pydra/tasks/mrtrix3/v3_1/mrdump.py index 05295f0..da3f8e8 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrdump.py +++ b/pydra/tasks/mrtrix3/v3_1/mrdump.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mredit.py b/pydra/tasks/mrtrix3/v3_1/mredit.py index d1b3cb3..71d6c41 100644 --- a/pydra/tasks/mrtrix3/v3_1/mredit.py +++ b/pydra/tasks/mrtrix3/v3_1/mredit.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrfilter.py b/pydra/tasks/mrtrix3/v3_1/mrfilter.py index bf831ec..5f57e93 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/mrfilter.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrgrid.py b/pydra/tasks/mrtrix3/v3_1/mrgrid.py index f0a04c8..f225af9 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrgrid.py +++ b/pydra/tasks/mrtrix3/v3_1/mrgrid.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrhistmatch.py b/pydra/tasks/mrtrix3/v3_1/mrhistmatch.py index bb63901..f8cba5e 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrhistmatch.py +++ b/pydra/tasks/mrtrix3/v3_1/mrhistmatch.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrhistogram.py b/pydra/tasks/mrtrix3/v3_1/mrhistogram.py index b112b44..020d805 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrhistogram.py +++ b/pydra/tasks/mrtrix3/v3_1/mrhistogram.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrinfo.py b/pydra/tasks/mrtrix3/v3_1/mrinfo.py index 6bb7abe..585df2b 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrinfo.py +++ b/pydra/tasks/mrtrix3/v3_1/mrinfo.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrmath.py b/pydra/tasks/mrtrix3/v3_1/mrmath.py index 4b6e3df..3906850 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrmath.py +++ b/pydra/tasks/mrtrix3/v3_1/mrmath.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrmetric.py b/pydra/tasks/mrtrix3/v3_1/mrmetric.py index 4919834..feff96b 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrmetric.py +++ b/pydra/tasks/mrtrix3/v3_1/mrmetric.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrregister.py b/pydra/tasks/mrtrix3/v3_1/mrregister.py index 8028064..911aa7c 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrregister.py +++ b/pydra/tasks/mrtrix3/v3_1/mrregister.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrstats.py b/pydra/tasks/mrtrix3/v3_1/mrstats.py index 6ca9f91..e957bd1 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrstats.py +++ b/pydra/tasks/mrtrix3/v3_1/mrstats.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrthreshold.py b/pydra/tasks/mrtrix3/v3_1/mrthreshold.py index 87fd5fc..241b187 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrthreshold.py +++ b/pydra/tasks/mrtrix3/v3_1/mrthreshold.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrtransform.py b/pydra/tasks/mrtrix3/v3_1/mrtransform.py index ac04568..825169f 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrtransform.py +++ b/pydra/tasks/mrtrix3/v3_1/mrtransform.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py b/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py index 6a2e4e3..bd6e3c5 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py +++ b/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/mtnormalise.py b/pydra/tasks/mrtrix3/v3_1/mtnormalise.py index 809bda9..48d6045 100644 --- a/pydra/tasks/mrtrix3/v3_1/mtnormalise.py +++ b/pydra/tasks/mrtrix3/v3_1/mtnormalise.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/peaks2amp.py b/pydra/tasks/mrtrix3/v3_1/peaks2amp.py index 59070d5..3720291 100644 --- a/pydra/tasks/mrtrix3/v3_1/peaks2amp.py +++ b/pydra/tasks/mrtrix3/v3_1/peaks2amp.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/peaks2fixel.py b/pydra/tasks/mrtrix3/v3_1/peaks2fixel.py index bf55801..ce8cefd 100644 --- a/pydra/tasks/mrtrix3/v3_1/peaks2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/peaks2fixel.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/population_template.py b/pydra/tasks/mrtrix3/v3_1/population_template.py index 4b54289..ccbd02d 100644 --- a/pydra/tasks/mrtrix3/v3_1/population_template.py +++ b/pydra/tasks/mrtrix3/v3_1/population_template.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/responsemean.py b/pydra/tasks/mrtrix3/v3_1/responsemean.py index 08f1a84..0404d78 100644 --- a/pydra/tasks/mrtrix3/v3_1/responsemean.py +++ b/pydra/tasks/mrtrix3/v3_1/responsemean.py @@ -3,7 +3,7 @@ import typing from pathlib import Path # noqa: F401 from fileformats.generic import FsObject, File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import Tracks, ImageIn, ImageOut # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import Tracks, ImageIn, ImageOut # noqa: F401 from pydra.utils.typing import MultiInputObj from pydra.compose import shell diff --git a/pydra/tasks/mrtrix3/v3_1/sh2amp.py b/pydra/tasks/mrtrix3/v3_1/sh2amp.py index b51f8e2..7c1d10a 100644 --- a/pydra/tasks/mrtrix3/v3_1/sh2amp.py +++ b/pydra/tasks/mrtrix3/v3_1/sh2amp.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/sh2peaks.py b/pydra/tasks/mrtrix3/v3_1/sh2peaks.py index d748cc2..10bde8c 100644 --- a/pydra/tasks/mrtrix3/v3_1/sh2peaks.py +++ b/pydra/tasks/mrtrix3/v3_1/sh2peaks.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/sh2power.py b/pydra/tasks/mrtrix3/v3_1/sh2power.py index a7bda38..a4db135 100644 --- a/pydra/tasks/mrtrix3/v3_1/sh2power.py +++ b/pydra/tasks/mrtrix3/v3_1/sh2power.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/sh2response.py b/pydra/tasks/mrtrix3/v3_1/sh2response.py index 802a39f..0067a8d 100644 --- a/pydra/tasks/mrtrix3/v3_1/sh2response.py +++ b/pydra/tasks/mrtrix3/v3_1/sh2response.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/shbasis.py b/pydra/tasks/mrtrix3/v3_1/shbasis.py index d298da3..0e32c1a 100644 --- a/pydra/tasks/mrtrix3/v3_1/shbasis.py +++ b/pydra/tasks/mrtrix3/v3_1/shbasis.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/shconv.py b/pydra/tasks/mrtrix3/v3_1/shconv.py index eac34d1..400b598 100644 --- a/pydra/tasks/mrtrix3/v3_1/shconv.py +++ b/pydra/tasks/mrtrix3/v3_1/shconv.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tck2connectome.py b/pydra/tasks/mrtrix3/v3_1/tck2connectome.py index 10a4834..2589b2c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tck2connectome.py +++ b/pydra/tasks/mrtrix3/v3_1/tck2connectome.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tck2fixel.py b/pydra/tasks/mrtrix3/v3_1/tck2fixel.py index efb8db1..c273ba6 100644 --- a/pydra/tasks/mrtrix3/v3_1/tck2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/tck2fixel.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckconvert.py b/pydra/tasks/mrtrix3/v3_1/tckconvert.py index a8a8e10..60e1092 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tckconvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckdfc.py b/pydra/tasks/mrtrix3/v3_1/tckdfc.py index 6be274a..4cd6cdc 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckdfc.py +++ b/pydra/tasks/mrtrix3/v3_1/tckdfc.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckedit.py b/pydra/tasks/mrtrix3/v3_1/tckedit.py index 7e8eba0..0fe3f97 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckedit.py +++ b/pydra/tasks/mrtrix3/v3_1/tckedit.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckgen.py b/pydra/tasks/mrtrix3/v3_1/tckgen.py index c41b594..dc54e2c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckgen.py +++ b/pydra/tasks/mrtrix3/v3_1/tckgen.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckglobal.py b/pydra/tasks/mrtrix3/v3_1/tckglobal.py index 52e5ffd..810b3ef 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckglobal.py +++ b/pydra/tasks/mrtrix3/v3_1/tckglobal.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckinfo.py b/pydra/tasks/mrtrix3/v3_1/tckinfo.py index 003da97..b38480c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckinfo.py +++ b/pydra/tasks/mrtrix3/v3_1/tckinfo.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckmap.py b/pydra/tasks/mrtrix3/v3_1/tckmap.py index 9f215b5..52dc518 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckmap.py +++ b/pydra/tasks/mrtrix3/v3_1/tckmap.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckresample.py b/pydra/tasks/mrtrix3/v3_1/tckresample.py index d4f478b..a5bd854 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckresample.py +++ b/pydra/tasks/mrtrix3/v3_1/tckresample.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tcksample.py b/pydra/tasks/mrtrix3/v3_1/tcksample.py index 18a20fd..2f2f03c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tcksample.py +++ b/pydra/tasks/mrtrix3/v3_1/tcksample.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tcksift.py b/pydra/tasks/mrtrix3/v3_1/tcksift.py index 4838cb4..bff149a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tcksift.py +++ b/pydra/tasks/mrtrix3/v3_1/tcksift.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tcksift2.py b/pydra/tasks/mrtrix3/v3_1/tcksift2.py index 011fb9d..ac91182 100644 --- a/pydra/tasks/mrtrix3/v3_1/tcksift2.py +++ b/pydra/tasks/mrtrix3/v3_1/tcksift2.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tckstats.py b/pydra/tasks/mrtrix3/v3_1/tckstats.py index bcf7551..c7807dd 100644 --- a/pydra/tasks/mrtrix3/v3_1/tckstats.py +++ b/pydra/tasks/mrtrix3/v3_1/tckstats.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tcktransform.py b/pydra/tasks/mrtrix3/v3_1/tcktransform.py index fc869a3..6a885d2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tcktransform.py +++ b/pydra/tasks/mrtrix3/v3_1/tcktransform.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tensor2metric.py b/pydra/tasks/mrtrix3/v3_1/tensor2metric.py index a291765..729a726 100644 --- a/pydra/tasks/mrtrix3/v3_1/tensor2metric.py +++ b/pydra/tasks/mrtrix3/v3_1/tensor2metric.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_afdconnectivity.py b/pydra/tasks/mrtrix3/v3_1/tests/test_afdconnectivity.py index f86d25d..683b3c8 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_afdconnectivity.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_afdconnectivity.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import AfdConnectivity diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_amp2response.py b/pydra/tasks/mrtrix3/v3_1/tests/test_amp2response.py index 8434230..9e7f4af 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_amp2response.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_amp2response.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Amp2Response diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_amp2sh.py b/pydra/tasks/mrtrix3/v3_1/tests/test_amp2sh.py index 89c1425..f6de0a3 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_amp2sh.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_amp2sh.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Amp2Sh diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_connectome2tck.py b/pydra/tasks/mrtrix3/v3_1/tests/test_connectome2tck.py index f5f935e..8a8721c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_connectome2tck.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_connectome2tck.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Connectome2Tck diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_connectomeedit.py b/pydra/tasks/mrtrix3/v3_1/tests/test_connectomeedit.py index da7f6c3..85938d1 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_connectomeedit.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_connectomeedit.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import ConnectomeEdit diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_connectomestats.py b/pydra/tasks/mrtrix3/v3_1/tests/test_connectomestats.py index a267f64..d7b9262 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_connectomestats.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_connectomestats.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import ConnectomeStats diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dcmedit.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dcmedit.py index 2dd4ccc..ea092d0 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dcmedit.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dcmedit.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DcmEdit diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dcminfo.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dcminfo.py index 81fe9d6..9bd87c9 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dcminfo.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dcminfo.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DcmInfo diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dirflip.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dirflip.py index f4f61ca..c691852 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dirflip.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dirflip.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DirFlip diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dirgen.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dirgen.py index b8a6a0a..3134c9c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dirgen.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dirgen.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DirGen diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dirmerge.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dirmerge.py index 8d5f3d2..a96fed3 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dirmerge.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dirmerge.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DirMerge diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dirorder.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dirorder.py index 08fc2ee..5bc87be 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dirorder.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dirorder.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DirOrder diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dirrotate.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dirrotate.py index 77be927..6986285 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dirrotate.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dirrotate.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DirRotate diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dirsplit.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dirsplit.py index e7750fd..09d8533 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dirsplit.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dirsplit.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DirSplit diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dirstat.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dirstat.py index 6b25ca7..59a851d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dirstat.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dirstat.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DirStat diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2adc.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2adc.py index eae84de..b7ab0f7 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2adc.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2adc.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Adc diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2fod.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2fod.py index 3d0e735..bc01094 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2fod.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2fod.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Fod diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_3dautomask.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_3dautomask.py index 76767d6..f6f1cd4 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_3dautomask.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_3dautomask.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_3dautomask diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_ants.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_ants.py index 6d40d73..ef1f973 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_ants.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_ants.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Ants diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_b02template.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_b02template.py index 379f824..cde85fe 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_b02template.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_b02template.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_B02template diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_consensus.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_consensus.py index b3e8e9d..a3efe55 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_consensus.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_consensus.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Consensus diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_fslbet.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_fslbet.py index 69cc06f..230b1a1 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_fslbet.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_fslbet.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Fslbet diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_hdbet.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_hdbet.py index e69715c..d4e0aab 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_hdbet.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_hdbet.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Hdbet diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_legacy.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_legacy.py index 16fded8..e36957a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_legacy.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_legacy.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Legacy diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mean.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mean.py index 68ebaaf..4dd76e2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mean.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mean.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Mean diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mtnorm.py index d8004b7..310dc9e 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_mtnorm.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Mtnorm diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_synthstrip.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_synthstrip.py index 0772c91..7843d7a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_synthstrip.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_synthstrip.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Synthstrip diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_trace.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_trace.py index 044ede7..b4bb21c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_trace.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2mask_trace.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Mask_Trace diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_dhollander.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_dhollander.py index b60a458..5bd1e58 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_dhollander.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_dhollander.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Response_Dhollander diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_fa.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_fa.py index e5fa186..4520f24 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_fa.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_fa.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Response_Fa diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_manual.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_manual.py index 5f7e256..404c492 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_manual.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_manual.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Response_Manual diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_msmt_5tt.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_msmt_5tt.py index b0f6a78..3983fec 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_msmt_5tt.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_msmt_5tt.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Response_Msmt_5tt diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tax.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tax.py index 0394ce4..dcf55fd 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tax.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tax.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Response_Tax diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tournier.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tournier.py index 44d13ab..e50c8d7 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tournier.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2response_tournier.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Response_Tournier diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2tensor.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2tensor.py index 9ab7e85..d9d9a96 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2tensor.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwi2tensor.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Dwi2Tensor diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_ants.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_ants.py index 59b8142..26c0bfb 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_ants.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_ants.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiBiascorrect_Ants diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_fsl.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_fsl.py index 07c6c1a..234ec1b 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_fsl.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_fsl.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiBiascorrect_Fsl diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_mtnorm.py index cb31ab5..1dcc2e9 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiascorrect_mtnorm.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiBiascorrect_Mtnorm diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiasnormmask.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiasnormmask.py index 65fc913..3a26d4a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiasnormmask.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwibiasnormmask.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiBiasnormmask diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwicat.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwicat.py index 81336ed..ff5530c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwicat.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwicat.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiCat diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwidenoise.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwidenoise.py index 4617678..d0780c4 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwidenoise.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwidenoise.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiDenoise diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwiextract.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwiextract.py index 7fc8743..e9df47f 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwiextract.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwiextract.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiExtract diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwifslpreproc.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwifslpreproc.py index dbfa555..986ecca 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwifslpreproc.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwifslpreproc.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiFslpreproc diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwigradcheck.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwigradcheck.py index 9b0421f..e843d16 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwigradcheck.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwigradcheck.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiGradcheck diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_group.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_group.py index a80048b..5f9be87 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_group.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_group.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiNormalise_Group diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_manual.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_manual.py index 89648c5..54b103d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_manual.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_manual.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiNormalise_Manual diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_mtnorm.py index 82f7a71..2e6350d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwinormalise_mtnorm.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiNormalise_Mtnorm diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_dwishellmath.py b/pydra/tasks/mrtrix3/v3_1/tests/test_dwishellmath.py index c1e7e3c..84d652f 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_dwishellmath.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_dwishellmath.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import DwiShellmath diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2gmwmi.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2gmwmi.py index 452e2f8..556ed79 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2gmwmi.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2gmwmi.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fivett2Gmwmi diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2vis.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2vis.py index 501e348..980704b 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2vis.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivett2vis.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fivett2Vis diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettcheck.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettcheck.py index 6586892..12030d0 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettcheck.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettcheck.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FivettCheck diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettedit.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettedit.py index 627acdf..f41d941 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettedit.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettedit.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FivettEdit diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_deep_atropos.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_deep_atropos.py index a37a8dc..ed0a27c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_deep_atropos.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_deep_atropos.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FivettGen_Deep_atropos diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_freesurfer.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_freesurfer.py index 18d7e66..a7f8591 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_freesurfer.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_freesurfer.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FivettGen_Freesurfer diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_fsl.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_fsl.py index 5593ca3..215d3ae 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_fsl.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_fsl.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FivettGen_Fsl diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_gif.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_gif.py index 937a4a4..c6f034f 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_gif.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_gif.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FivettGen_Gif diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_hsvs.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_hsvs.py index 794e3ca..8a40193 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_hsvs.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fivettgen_hsvs.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FivettGen_Hsvs diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2peaks.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2peaks.py index b6f9ebc..7d264d3 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2peaks.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2peaks.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fixel2Peaks diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2sh.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2sh.py index d6b2cfa..f0bd5a2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2sh.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2sh.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fixel2Sh diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2tsf.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2tsf.py index 9e02706..b214f1d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2tsf.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2tsf.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fixel2Tsf diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2voxel.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2voxel.py index 6d843b6..f16cd16 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2voxel.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixel2voxel.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fixel2Voxel diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcfestats.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcfestats.py index d10e981..abeae00 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcfestats.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcfestats.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FixelCfestats diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconnectivity.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconnectivity.py index 11e65be..2582c34 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconnectivity.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconnectivity.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FixelConnectivity diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconvert.py index f39c6f7..5cb1b59 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelconvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FixelConvert diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcorrespondence.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcorrespondence.py index 5c6246d..c4212cd 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcorrespondence.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcorrespondence.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FixelCorrespondence diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcrop.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcrop.py index 48aaaff..1bb3440 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcrop.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelcrop.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FixelCrop diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelfilter.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelfilter.py index 8d8ba39..4c014cb 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelfilter.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FixelFilter diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelreorient.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelreorient.py index 256ebdf..3521709 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fixelreorient.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fixelreorient.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import FixelReorient diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fod2dec.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fod2dec.py index 26e0037..9f1d7b7 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fod2dec.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fod2dec.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fod2Dec diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_fod2fixel.py b/pydra/tasks/mrtrix3/v3_1/tests/test_fod2fixel.py index c976818..1ea25f7 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_fod2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_fod2fixel.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Fod2Fixel diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_label2colour.py b/pydra/tasks/mrtrix3/v3_1/tests/test_label2colour.py index 9c4a237..19c8f12 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_label2colour.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_label2colour.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Label2Colour diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_label2mesh.py b/pydra/tasks/mrtrix3/v3_1/tests/test_label2mesh.py index b52103a..f71914e 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_label2mesh.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_label2mesh.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Label2Mesh diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_labelconvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_labelconvert.py index 6df3508..55b8aa1 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_labelconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_labelconvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import LabelConvert diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_labelsgmfirst.py b/pydra/tasks/mrtrix3/v3_1/tests/test_labelsgmfirst.py index 286f8ee..bfa12ef 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_labelsgmfirst.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_labelsgmfirst.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import LabelSgmfirst diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_labelstats.py b/pydra/tasks/mrtrix3/v3_1/tests/test_labelstats.py index 272a7b1..f888ca7 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_labelstats.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_labelstats.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import LabelStats diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mask2glass.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mask2glass.py index 73c584b..ebba7ae 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mask2glass.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mask2glass.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Mask2Glass diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_maskdump.py b/pydra/tasks/mrtrix3/v3_1/tests/test_maskdump.py index 5be3124..5df9f6d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_maskdump.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_maskdump.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MaskDump diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_maskfilter.py b/pydra/tasks/mrtrix3/v3_1/tests/test_maskfilter.py index 63d5802..46be213 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_maskfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_maskfilter.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MaskFilter diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mesh2voxel.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mesh2voxel.py index 05b7af9..1ad4033 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mesh2voxel.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mesh2voxel.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Mesh2Voxel diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_meshconvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_meshconvert.py index aaf5125..548dc1f 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_meshconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_meshconvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MeshConvert diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_meshfilter.py b/pydra/tasks/mrtrix3/v3_1/tests/test_meshfilter.py index af59c2c..4c18ee2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_meshfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_meshfilter.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MeshFilter diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mraverageheader.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mraverageheader.py index f9d1c96..ae574bb 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mraverageheader.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mraverageheader.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrAverageheader diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcat.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcat.py index 342796e..d33739d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcat.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcat.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrCat diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcentroid.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcentroid.py index f9a7a84..d60ba18 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcentroid.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcentroid.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrCentroid diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcheckerboardmask.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcheckerboardmask.py index a380f9f..b304da1 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcheckerboardmask.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcheckerboardmask.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrCheckerboardmask diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrclusterstats.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrclusterstats.py index fbe83fa..0481679 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrclusterstats.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrclusterstats.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrClusterstats diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcolour.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcolour.py index 76976c3..52f29fb 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrcolour.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrcolour.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrColour diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrconvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrconvert.py index 9d6455f..1779ef5 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrconvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrConvert diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrdegibbs.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrdegibbs.py index 441e2c8..427189c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrdegibbs.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrdegibbs.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrDegibbs diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrdump.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrdump.py index 6c6dcac..1ce26bc 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrdump.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrdump.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrDump diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mredit.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mredit.py index a37a7c9..e8c3a58 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mredit.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mredit.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrEdit diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrfilter.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrfilter.py index c7c81bc..ad7f913 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrfilter.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrfilter.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrFilter diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrgrid.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrgrid.py index 15a6360..d29f44d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrgrid.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrgrid.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrGrid diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistmatch.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistmatch.py index a388057..bdef573 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistmatch.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistmatch.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrHistmatch diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistogram.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistogram.py index f3903f3..c2c0111 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistogram.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrhistogram.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrHistogram diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrinfo.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrinfo.py index 4e26fae..a492764 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrinfo.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrinfo.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrInfo diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrmath.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrmath.py index 03c653e..9a90203 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrmath.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrmath.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrMath diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrmetric.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrmetric.py index 275ebd3..319bfab 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrmetric.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrmetric.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrMetric diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrregister.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrregister.py index 49a7cc0..7b4ade2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrregister.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrregister.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrRegister diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrstats.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrstats.py index c2293de..e61f7bf 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrstats.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrstats.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrStats diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrthreshold.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrthreshold.py index 8499511..f788c8b 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrthreshold.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrthreshold.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrThreshold diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrtransform.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrtransform.py index 044e3cb..0cebfdd 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrtransform.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrtransform.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrTransform diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mrtrix_cleanup.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mrtrix_cleanup.py index dc247b6..130071d 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mrtrix_cleanup.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mrtrix_cleanup.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MrTrix_Cleanup diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_mtnormalise.py b/pydra/tasks/mrtrix3/v3_1/tests/test_mtnormalise.py index 44ab60f..34a0d33 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_mtnormalise.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_mtnormalise.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import MtNormalise diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2amp.py b/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2amp.py index 62e824b..cfc7aac 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2amp.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2amp.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Peaks2Amp diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2fixel.py b/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2fixel.py index 440e567..47cb4f4 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_peaks2fixel.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Peaks2Fixel diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_population_template.py b/pydra/tasks/mrtrix3/v3_1/tests/test_population_template.py index 6e15178..ccb47f7 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_population_template.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_population_template.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import PopulationTemplate diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_responsemean.py b/pydra/tasks/mrtrix3/v3_1/tests/test_responsemean.py index 1537282..b995e62 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_responsemean.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_responsemean.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import ResponseMean diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2amp.py b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2amp.py index 4cd6968..6f40969 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2amp.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2amp.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Sh2Amp diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2peaks.py b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2peaks.py index 3855236..fa0fd57 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2peaks.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2peaks.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Sh2Peaks diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2power.py b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2power.py index 3f9f1cb..125b34e 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2power.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2power.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Sh2Power diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2response.py b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2response.py index d9a3759..4c024ea 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_sh2response.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_sh2response.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Sh2Response diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_shbasis.py b/pydra/tasks/mrtrix3/v3_1/tests/test_shbasis.py index 6ea3bc3..d84dae8 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_shbasis.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_shbasis.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import ShBasis diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_shconv.py b/pydra/tasks/mrtrix3/v3_1/tests/test_shconv.py index ab4e923..f412bcd 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_shconv.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_shconv.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import ShConv diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tck2connectome.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tck2connectome.py index 829b3e4..1a7719c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tck2connectome.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tck2connectome.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Tck2Connectome diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tck2fixel.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tck2fixel.py index 49d8d0e..2431e9f 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tck2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tck2fixel.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Tck2Fixel diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckconvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckconvert.py index bafd053..d911a16 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckconvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckConvert diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckdfc.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckdfc.py index dfba559..26bfc98 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckdfc.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckdfc.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckDfc diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckedit.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckedit.py index 3259310..6d0b153 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckedit.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckedit.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckEdit diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckgen.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckgen.py index 269e9c6..9d3fde1 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckgen.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckgen.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckGen diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckglobal.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckglobal.py index 4afa7b9..2c7d9d2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckglobal.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckglobal.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckGlobal diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckinfo.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckinfo.py index bb0ac36..bc008a3 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckinfo.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckinfo.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckInfo diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckmap.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckmap.py index b1513a1..da5ccbc 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckmap.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckmap.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckMap diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckresample.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckresample.py index aa630a5..19b59e6 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckresample.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckresample.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckResample diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tcksample.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tcksample.py index f70756c..77c1d28 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tcksample.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tcksample.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckSample diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift.py index 3caa9e6..21ef742 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckSift diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift2.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift2.py index ccf3c40..f68f4b1 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift2.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tcksift2.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckSift2 diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tckstats.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tckstats.py index 26fa736..5450a1a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tckstats.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tckstats.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckStats diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tcktransform.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tcktransform.py index 81ddd1d..99628c4 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tcktransform.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tcktransform.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TckTransform diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tensor2metric.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tensor2metric.py index b392b47..791779a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tensor2metric.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tensor2metric.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Tensor2Metric diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_transformcalc.py b/pydra/tasks/mrtrix3/v3_1/tests/test_transformcalc.py index 07f7026..eb60e4e 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_transformcalc.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_transformcalc.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TransformCalc diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_transformcompose.py b/pydra/tasks/mrtrix3/v3_1/tests/test_transformcompose.py index 42ddda9..db0c25a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_transformcompose.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_transformcompose.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TransformCompose diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_transformconvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_transformconvert.py index 3c34a61..3d1c3e2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_transformconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_transformconvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TransformConvert diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfdivide.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfdivide.py index 2debcc4..b089930 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfdivide.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfdivide.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TsfDivide diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfinfo.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfinfo.py index 8f467f6..be1b0a0 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfinfo.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfinfo.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TsfInfo diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfmult.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfmult.py index 05b6f04..8f8543a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfmult.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfmult.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TsfMult diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfsmooth.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfsmooth.py index 48f20e0..dd4cd72 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfsmooth.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfsmooth.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TsfSmooth diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfthreshold.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfthreshold.py index 8d0b39e..d639a04 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfthreshold.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfthreshold.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TsfThreshold diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfvalidate.py b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfvalidate.py index 8d89454..d2bd054 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_tsfvalidate.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_tsfvalidate.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import TsfValidate diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_vectorstats.py b/pydra/tasks/mrtrix3/v3_1/tests/test_vectorstats.py index 21d548e..5c2388c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_vectorstats.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_vectorstats.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import VectorStats diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2fixel.py b/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2fixel.py index 4213188..6e960fd 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2fixel.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Voxel2Fixel diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2mesh.py b/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2mesh.py index fd8f196..4c7ce18 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2mesh.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_voxel2mesh.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Voxel2Mesh diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_warp2metric.py b/pydra/tasks/mrtrix3/v3_1/tests/test_warp2metric.py index c902fad..5e452e7 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_warp2metric.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_warp2metric.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import Warp2Metric diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_warpconvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_warpconvert.py index 5583736..942389b 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_warpconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_warpconvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import WarpConvert diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_warpcorrect.py b/pydra/tasks/mrtrix3/v3_1/tests/test_warpcorrect.py index 35a8841..5a5e90c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_warpcorrect.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_warpcorrect.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import WarpCorrect diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_warpinit.py b/pydra/tasks/mrtrix3/v3_1/tests/test_warpinit.py index 52d8a7e..e55664c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_warpinit.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_warpinit.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import WarpInit diff --git a/pydra/tasks/mrtrix3/v3_1/tests/test_warpinvert.py b/pydra/tasks/mrtrix3/v3_1/tests/test_warpinvert.py index 967d05f..d0f4f2c 100644 --- a/pydra/tasks/mrtrix3/v3_1/tests/test_warpinvert.py +++ b/pydra/tasks/mrtrix3/v3_1/tests/test_warpinvert.py @@ -3,7 +3,7 @@ import pytest from fileformats.generic import File, Directory, FsObject # noqa from fileformats.medimage import Nifti1 # noqa -from fileformats.medimage_mrtrix3 import ImageFormat, ImageIn, Tracks # noqa +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageIn, Tracks # noqa from pydra.tasks.mrtrix3.v3_1 import WarpInvert diff --git a/pydra/tasks/mrtrix3/v3_1/transformcalc.py b/pydra/tasks/mrtrix3/v3_1/transformcalc.py index b88be61..032ac6b 100644 --- a/pydra/tasks/mrtrix3/v3_1/transformcalc.py +++ b/pydra/tasks/mrtrix3/v3_1/transformcalc.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/transformcompose.py b/pydra/tasks/mrtrix3/v3_1/transformcompose.py index 7fbbe79..961ddb6 100644 --- a/pydra/tasks/mrtrix3/v3_1/transformcompose.py +++ b/pydra/tasks/mrtrix3/v3_1/transformcompose.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/transformconvert.py b/pydra/tasks/mrtrix3/v3_1/transformconvert.py index 1ab1a5f..5c02c94 100644 --- a/pydra/tasks/mrtrix3/v3_1/transformconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/transformconvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tsfdivide.py b/pydra/tasks/mrtrix3/v3_1/tsfdivide.py index 6c53a1d..7d377b9 100644 --- a/pydra/tasks/mrtrix3/v3_1/tsfdivide.py +++ b/pydra/tasks/mrtrix3/v3_1/tsfdivide.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tsfinfo.py b/pydra/tasks/mrtrix3/v3_1/tsfinfo.py index 6e3b7e2..733e35a 100644 --- a/pydra/tasks/mrtrix3/v3_1/tsfinfo.py +++ b/pydra/tasks/mrtrix3/v3_1/tsfinfo.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tsfmult.py b/pydra/tasks/mrtrix3/v3_1/tsfmult.py index 525fd2a..08d11d8 100644 --- a/pydra/tasks/mrtrix3/v3_1/tsfmult.py +++ b/pydra/tasks/mrtrix3/v3_1/tsfmult.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tsfsmooth.py b/pydra/tasks/mrtrix3/v3_1/tsfsmooth.py index d9ebf75..204fac1 100644 --- a/pydra/tasks/mrtrix3/v3_1/tsfsmooth.py +++ b/pydra/tasks/mrtrix3/v3_1/tsfsmooth.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tsfthreshold.py b/pydra/tasks/mrtrix3/v3_1/tsfthreshold.py index 1d3587e..b6dcc76 100644 --- a/pydra/tasks/mrtrix3/v3_1/tsfthreshold.py +++ b/pydra/tasks/mrtrix3/v3_1/tsfthreshold.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/tsfvalidate.py b/pydra/tasks/mrtrix3/v3_1/tsfvalidate.py index e700fdc..359ecd2 100644 --- a/pydra/tasks/mrtrix3/v3_1/tsfvalidate.py +++ b/pydra/tasks/mrtrix3/v3_1/tsfvalidate.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/vectorstats.py b/pydra/tasks/mrtrix3/v3_1/vectorstats.py index d5d0982..8096716 100644 --- a/pydra/tasks/mrtrix3/v3_1/vectorstats.py +++ b/pydra/tasks/mrtrix3/v3_1/vectorstats.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/voxel2fixel.py b/pydra/tasks/mrtrix3/v3_1/voxel2fixel.py index 5e73fa1..8a4c857 100644 --- a/pydra/tasks/mrtrix3/v3_1/voxel2fixel.py +++ b/pydra/tasks/mrtrix3/v3_1/voxel2fixel.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/voxel2mesh.py b/pydra/tasks/mrtrix3/v3_1/voxel2mesh.py index aae9ba4..c658762 100644 --- a/pydra/tasks/mrtrix3/v3_1/voxel2mesh.py +++ b/pydra/tasks/mrtrix3/v3_1/voxel2mesh.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/warp2metric.py b/pydra/tasks/mrtrix3/v3_1/warp2metric.py index 395e11a..45a53aa 100644 --- a/pydra/tasks/mrtrix3/v3_1/warp2metric.py +++ b/pydra/tasks/mrtrix3/v3_1/warp2metric.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/warpconvert.py b/pydra/tasks/mrtrix3/v3_1/warpconvert.py index debfb07..d8511fa 100644 --- a/pydra/tasks/mrtrix3/v3_1/warpconvert.py +++ b/pydra/tasks/mrtrix3/v3_1/warpconvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/warpcorrect.py b/pydra/tasks/mrtrix3/v3_1/warpcorrect.py index cca429e..4e49326 100644 --- a/pydra/tasks/mrtrix3/v3_1/warpcorrect.py +++ b/pydra/tasks/mrtrix3/v3_1/warpcorrect.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/warpinit.py b/pydra/tasks/mrtrix3/v3_1/warpinit.py index 3ebf3b5..ceeb92a 100644 --- a/pydra/tasks/mrtrix3/v3_1/warpinit.py +++ b/pydra/tasks/mrtrix3/v3_1/warpinit.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/pydra/tasks/mrtrix3/v3_1/warpinvert.py b/pydra/tasks/mrtrix3/v3_1/warpinvert.py index 9c8d7b9..99ac6cb 100644 --- a/pydra/tasks/mrtrix3/v3_1/warpinvert.py +++ b/pydra/tasks/mrtrix3/v3_1/warpinvert.py @@ -3,7 +3,7 @@ import typing as ty from pathlib import Path # noqa: F401 from fileformats.generic import File, Directory # noqa: F401 -from fileformats.medimage_mrtrix3 import ImageIn, ImageOut, Tracks # noqa: F401 +from fileformats.vendor.mrtrix3.medimage import ImageIn, ImageOut, Tracks # noqa: F401 from pydra.compose import shell from pydra.utils.typing import MultiInputObj diff --git a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/__init__.py b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/__init__.py similarity index 72% rename from related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/__init__.py rename to related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/__init__.py index 2b41e46..4a8780f 100644 --- a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/__init__.py +++ b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/__init__.py @@ -1,4 +1,4 @@ -from ._version import __version__ +from .._version import __version__ from . import image from . import gradients from . import tracks diff --git a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/converters.py b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/converters.py similarity index 95% rename from related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/converters.py rename to related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/converters.py index 07f0e9f..fa43b9d 100644 --- a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/converters.py +++ b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/converters.py @@ -1,7 +1,7 @@ import typing as ty from fileformats.core import converter, FileSet from fileformats.medimage.base import MedicalImage -from fileformats.medimage_mrtrix3 import ( +from fileformats.vendor.mrtrix3.medimage import ( ImageFormat as MrtrixImage, ImageHeader as MrtrixImageHeader, ImageFormatGz as MrtrixImageGz, diff --git a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/gradients.py b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/gradients.py similarity index 88% rename from related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/gradients.py rename to related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/gradients.py index 854b1b7..4ab324c 100644 --- a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/gradients.py +++ b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/gradients.py @@ -3,7 +3,7 @@ from fileformats.core import extra_implementation from fileformats.medimage import DwiEncoding from fileformats.medimage.diffusion import EncodingArrayType -from fileformats.medimage_mrtrix3 import BFile +from fileformats.vendor.mrtrix3.medimage import BFile @extra_implementation(DwiEncoding.read_array) diff --git a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/image.py b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/image.py similarity index 95% rename from related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/image.py rename to related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/image.py index a3ecd21..0d22ea7 100644 --- a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/image.py +++ b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/image.py @@ -8,7 +8,7 @@ from medimages4tests.dummy.nifti import get_image as get_dummy_nifti from fileformats.core import FileSet, SampleFileGenerator, extra_implementation from fileformats.medimage import MedicalImage, Nifti1 -from fileformats.medimage_mrtrix3 import ImageFormat +from fileformats.vendor.mrtrix3.medimage import ImageFormat # if sys.version_info >= (3, 9): # from typing import TypeAlias diff --git a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/tests/test_converters.py b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/tests/test_converters.py similarity index 88% rename from related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/tests/test_converters.py rename to related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/tests/test_converters.py index dd61b72..ea245eb 100644 --- a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/tests/test_converters.py +++ b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/tests/test_converters.py @@ -1,5 +1,5 @@ from fileformats.medimage import NiftiBvec -from fileformats.medimage_mrtrix3 import ImageFormat, ImageHeader, ImageFormatGz +from fileformats.vendor.mrtrix3.medimage import ImageFormat, ImageHeader, ImageFormatGz # @pytest.mark.xfail(reason="not sure what the reason is at this stage, might be bug in Pydra") diff --git a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/tracks.py b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/tracks.py similarity index 95% rename from related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/tracks.py rename to related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/tracks.py index 2ef9f37..9f29eb9 100644 --- a/related-packages/fileformats-extras/fileformats/extras/medimage_mrtrix3/tracks.py +++ b/related-packages/fileformats-extras/fileformats/extras/vendor/mrtrix3/medimage/tracks.py @@ -4,7 +4,7 @@ from pathlib import Path import typing as ty from fileformats.core import FileSet, SampleFileGenerator, extra_implementation -from fileformats.medimage_mrtrix3 import Tracks +from fileformats.vendor.mrtrix3.medimage import Tracks @extra_implementation(FileSet.generate_sample_data) diff --git a/related-packages/fileformats-extras/pyproject.toml b/related-packages/fileformats-extras/pyproject.toml index f4a19a0..84bf2bb 100644 --- a/related-packages/fileformats-extras/pyproject.toml +++ b/related-packages/fileformats-extras/pyproject.toml @@ -3,14 +3,14 @@ requires = ["hatchling", "hatch-vcs"] build-backend = "hatchling.build" [project] -name = "fileformats-medimage-mrtrix3-extras" +name = "fileformats-vendor-mrtrix3-extras" description = "Classes for representing different file formats in Python classes for use in type hinting in data workflows" readme = "README.rst" requires-python = ">=3.8" dependencies = [ "fileformats >=0.15a3", "fileformats-medimage >=0.10.0a", - "fileformats-medimage-mrtrix3 >=3.0.4a5", + "fileformats-vendor-mrtrix3 >=3.0.4a5", "medimages4tests", "pydra >= 0.23.0", ] @@ -48,14 +48,14 @@ source = "vcs" raw-options = { root = "../.." } [tool.hatch.build.hooks.vcs] -version-file = "fileformats/extras/medimage_mrtrix3/_version.py" +version-file = "fileformats/extras/vendor/mrtrix3/_version.py" [tool.hatch.build.targets.wheel] packages = ["fileformats"] [tool.black] target-version = ['py38'] -exclude = "fileformats/extras/medimage_mrtrix3/_version.py" +exclude = "fileformats/extras/vendor/mrtrix3/_version.py" [tool.codespell] ignore-words = ".codespell-ignorewords" diff --git a/related-packages/fileformats/fileformats/medimage_mrtrix3/__init__.py b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/__init__.py similarity index 94% rename from related-packages/fileformats/fileformats/medimage_mrtrix3/__init__.py rename to related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/__init__.py index 1d228ae..347686c 100644 --- a/related-packages/fileformats/fileformats/medimage_mrtrix3/__init__.py +++ b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/__init__.py @@ -1,4 +1,4 @@ -from ._version import __version__ +from .._version import __version__ from .image import ImageFormat, ImageFormatGz, ImageHeader, ImageDataFile from .in_out import ImageIn, ImageOut diff --git a/related-packages/fileformats/fileformats/medimage_mrtrix3/dwi.py b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/dwi.py similarity index 100% rename from related-packages/fileformats/fileformats/medimage_mrtrix3/dwi.py rename to related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/dwi.py diff --git a/related-packages/fileformats/fileformats/medimage_mrtrix3/image.py b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/image.py similarity index 100% rename from related-packages/fileformats/fileformats/medimage_mrtrix3/image.py rename to related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/image.py diff --git a/related-packages/fileformats/fileformats/medimage_mrtrix3/in_out.py b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/in_out.py similarity index 100% rename from related-packages/fileformats/fileformats/medimage_mrtrix3/in_out.py rename to related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/in_out.py diff --git a/related-packages/fileformats/fileformats/medimage_mrtrix3/tests/test_mime.py b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/tests/test_mime.py similarity index 74% rename from related-packages/fileformats/fileformats/medimage_mrtrix3/tests/test_mime.py rename to related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/tests/test_mime.py index bba83bc..c9ddb0f 100644 --- a/related-packages/fileformats/fileformats/medimage_mrtrix3/tests/test_mime.py +++ b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/tests/test_mime.py @@ -1,5 +1,5 @@ from fileformats.core import from_mime -from fileformats.medimage_mrtrix3 import ImageFormatGz as MifGz +from fileformats.vendor.mrtrix3.medimage import ImageFormatGz as MifGz def test_mif_gz_mime_roundtrip(): diff --git a/related-packages/fileformats/fileformats/medimage_mrtrix3/track.py b/related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/track.py similarity index 100% rename from related-packages/fileformats/fileformats/medimage_mrtrix3/track.py rename to related-packages/fileformats/fileformats/vendor/mrtrix3/medimage/track.py diff --git a/related-packages/fileformats/pyproject.toml b/related-packages/fileformats/pyproject.toml index 5d030c6..35cdb87 100644 --- a/related-packages/fileformats/pyproject.toml +++ b/related-packages/fileformats/pyproject.toml @@ -3,7 +3,7 @@ requires = ["hatchling", "hatch-vcs"] build-backend = "hatchling.build" [project] -name = "fileformats-medimage-mrtrix3" +name = "fileformats-vendor-mrtrix3" description = "Classes for representing different file formats in Python classes for use in type hinting in data workflows" readme = "README.rst" requires-python = ">=3.8" @@ -42,14 +42,14 @@ source = "vcs" raw-options = { root = "../.." } [tool.hatch.build.hooks.vcs] -version-file = "fileformats/medimage_mrtrix3/_version.py" +version-file = "fileformats/vendor/mrtrix3/_version.py" [tool.hatch.build.targets.wheel] packages = ["fileformats"] [tool.black] target-version = ['py38'] -exclude = "fileformats/medimage_mrtrix3/_version.py" +exclude = "fileformats/vendor/mrtrix3/_version.py" [tool.codespell] ignore-words = ".codespell-ignorewords"