template.json

{
    "properties": {
        "input_source": {
            "default": "flat_folder",
              "title": "Source folder structure (include trailing slash)",
              "type": "string",
              "enum": [
                "flat_folder",
                "library_tree"
              ]
        },
        "input_folder": {
            "default": "s3://uwlm-personal/nkrumm/umi/fastq/280R/",
            "title": "Folder with FASTQs",
            "type": "string"
        },
        "output": {
            "default": "s3://uwlm-personal/nkrumm/umi/out/",
            "title": "Folder for output",
            "type": "string"
        },
        "run_id": {
            "default": "280R",
            "title": "Run ID",
            "type": "string"
        },
        "downsample_reads": {
            "default": null,
            "title": "Downsample FASTQ reads to # of pairs:",
            "type": "string"
        },
        "save_intermediate_output": {
            "default": false,
            "title": "Save intermediate output bam (and other) files.",
            "type": "boolean"
        }
    },
    "required": [
        "input_folder", 
        "run_id"
    ],
    "type": "object"
}