Releases: novak-jiri/cyclobranch
Releases · novak-jiri/cyclobranch
release 1.1.170
15.12.2015
Changes:
- Support of siderophores and polyketides improved.
- Feature added - summary table of matched peaks.
- Feature added - cancel buttons have been added into some progress dialogs.
- Bug fix - program crashed from time to time when combinations of building blocks were generated.
- Bug fix - detection of branch-cyclic NRPs using series D) and H) fixed.
release 1.0.1512
21.9.2015
Changes:
- Peaks in a spectrum detail window are now reported in a table.
- The table of peaks can be exported into a csv file.
- Columns containing real numbers are now sorted correctly.
- HTML export was improved.
- Peaklist from multiple scans can now be processed in MS mode.
- Support of identification of NRP siderophores added.
- Support of linear and cyclic polyketide siderophores added.
- Support of common biometals added (MS and MS/MS mode).
- Some keyboard shortcuts were added in the building blocks editor, sequence database editor, modifications editor, draw peptide tool, main window, settings dialog, and de novo graph window.
- Terminal modifications are now reported in spectra detail windows.
- Links to Norine and Smiles2Monomers added.
- A compatibility issue with CompassXPort was fixed.
- Some bugs were fixed and minor improvements were made.
release 1.0.1216
15.5.2015
Changes:
- Export of graphical visualization of spectra and peptides into SVG fixed for Windows.
- Feature added: show/hide isomers of building blocks in the output report.
- Bug fixed: HTML report was exported incorrectly when the order of rows was changed.
- Quit confirmation dialog added.
- Names of precursor ions of multiply charged ions and precursor ions with adducts fixed for MS/MS spectra.
- Peptide identification details in the main window can be also opened using Return/Enter key.
- Image export dialog improved in the spectrum detail window.
- Find text option added into the spectrum detail window.
- Similarity search can be performed when a peklist is searched against a database of MS/MS spectra.
- Monoisotopic masses of sequence candidates are now reported in the main window.
- Settings dialog was improved for monitors with small resolutions (scrollbars added).
- Export of PS images dropped in Linux (PDF files were generated instead of PS files; pdf2ps tool is now recommended to generate PS files).
- OS X is now supported.
- A text filter of rows was added into the main window, building blocks editor, sequence database editor and modifications editor.
- Save confirmation dialogs added into editors when closing editors.
- The internal periodic table has been extended.
- Some bugs and performance issues fixed.
release 1.0.1106
3.3.2015
Changes:
- Negatively charged ions are supported.
- c, x and z ions are supported.
- Precursor ion adducts are supported.
- Detection of scrambled peaks improved.
- Linux is now supported.
- Modifications editor added.
- A few building blocks were added which cannot eliminate H2O.
- Support of branched and branch-cyclic peptides improved.
- "Draw Peptide Tool" added.
- Keyboard shortcuts and toolbars added.
- Export of graphical visualization of spectra and peptides into PDF, PS, PNG and SVG (Linux only) added.
- Visualization of mass spectra improved.
- Some bugs and performance issues fixed.
release 1.0.850
19.11.2014
Changes:
- Database search added (for MS and MS/MS spectra).
- Databases of building blocks updated.
- Building blocks editor added.
- Sequence database editor added.
- A number of paths in a de novo graph forming sequence candidates is calculated before the search.
- The version of the application is checked when a results file (*.res) is opened.
- Number of matched scrambled fragment ions is reported when a cyclic peptide is searched.
- Small bugs fixed.
release 1.0.739
3.10.2014
Changes:
- Visualization of branch-cyclic peptides added.
- Visualization of branched peptides fixed.
- Visualization of mass spectra improved.
- Summary formulas of peptide sequence candidates added.
release 1.0.696
3.9.2014
Initial release.