diff --git a/README.md b/README.md
index 567727a..fc9f1ef 100644
--- a/README.md
+++ b/README.md
@@ -5,37 +5,37 @@ A comprehensive MCP (Model Context Protocol) server that provides Claude with pr
 ## Features
 
 ### Journaling
+
 - **Multi-section journaling**: Separate categories for feelings, project notes, user context, technical insights, and world knowledge
 - **Dual storage**: Project notes stay with projects, personal thoughts in user home directory
 - **Timestamped entries**: Each entry automatically dated with microsecond precision
 - **YAML frontmatter**: Structured metadata for each entry
 
 ### Search & Discovery
+
 - **Semantic search**: Natural language queries using local AI embeddings
 - **Vector similarity**: Find conceptually related entries, not just keyword matches
 - **Local AI processing**: Uses @xenova/transformers - no external API calls required
 - **Automatic indexing**: Embeddings generated for all entries on startup and ongoing
 
 ### Privacy & Performance
+
 - **Completely private**: All processing happens locally, no data leaves your machine
 - **Fast operation**: Optimized file structure and in-memory similarity calculations
 - **Robust fallbacks**: Intelligent path resolution across platforms
 
 ## Installation
 
-```bash
-npm install -g private-journal-mcp
-```
-
-Or install locally:
+Clone the repo, then
 
 ```bash
-npm install private-journal-mcp
+npm link
 ```
 
 ## Usage
 
 ### Basic Usage
+
 ```bash
 private-journal-mcp
 ```
@@ -43,6 +43,7 @@ private-journal-mcp
 This creates journal entries in `.private-journal/` in the current working directory.
 
 ### Custom Journal Path
+
 ```bash
 private-journal-mcp --journal-path /path/to/my/journal
 ```
@@ -50,11 +51,13 @@ private-journal-mcp --journal-path /path/to/my/journal
 ### MCP Configuration
 
 #### Claude Code (One-liner)
+
 ```bash
-claude mcp add-json private-journal '{"type":"stdio","command":"npx","args":["github:obra/private-journal-mcp"]}' -s user
+claude mcp add-json private-journal '{"type":"stdio","command":"npx","args":["private-journal-mcp"]}' -s user
 ```
 
 #### Manual Configuration
+
 Add to your MCP settings (e.g., Claude Desktop configuration):
 
 ```json
@@ -62,7 +65,7 @@ Add to your MCP settings (e.g., Claude Desktop configuration):
   "mcpServers": {
     "private-journal": {
       "command": "npx",
-      "args": ["github:obra/private-journal-mcp"]
+      "args": ["private-journal-mcp"]
     }
   }
 }
@@ -75,26 +78,34 @@ The server will automatically find a suitable location for the journal files.
 The server provides comprehensive journaling and search capabilities:
 
 ### `process_thoughts`
+
 Multi-section private journaling with these optional categories:
+
 - **feelings**: Private emotional processing space
-- **project_notes**: Technical insights specific to current project  
+- **project_notes**: Technical insights specific to current project
 - **user_context**: Notes about collaborating with humans
 - **technical_insights**: General software engineering learnings
 - **world_knowledge**: Domain knowledge and interesting discoveries
 
 ### `search_journal`
+
 Semantic search across all journal entries:
+
 - **query** (required): Natural language search query
 - **limit**: Maximum results (default: 10)
 - **type**: Search scope - 'project', 'user', or 'both' (default: 'both')
 - **sections**: Filter by specific categories
 
 ### `read_journal_entry`
+
 Read full content of specific entries:
+
 - **path** (required): File path from search results
 
 ### `list_recent_entries`
+
 Browse recent entries chronologically:
+
 - **limit**: Maximum entries (default: 10)
 - **type**: Entry scope - 'project', 'user', or 'both' (default: 'both')
 - **days**: Days back to search (default: 30)
@@ -102,6 +113,7 @@ Browse recent entries chronologically:
 ## File Structure
 
 ### Project Journal (per project)
+
 ```
 .private-journal/
 ├── 2025-05-31/
@@ -111,6 +123,7 @@ Browse recent entries chronologically:
 ```
 
 ### User Journal (global)
+
 ```
 ~/.private-journal/
 ├── 2025-05-31/
@@ -120,11 +133,12 @@ Browse recent entries chronologically:
 ```
 
 ### Entry Format
+
 Each markdown file contains YAML frontmatter and structured sections:
 
 ```markdown
 ---
-title: "2:30:45 PM - May 31, 2025"
+title: '2:30:45 PM - May 31, 2025'
 date: 2025-05-31T14:30:45.123Z
 timestamp: 1717160645123
 ---
@@ -182,4 +196,4 @@ Read more about the motivation and design in the [blog post](https://blog.fsck.c
 
 ## License
 
-MIT
\ No newline at end of file
+MIT
diff --git a/jest.config.js b/jest.config.cjs
similarity index 65%
rename from jest.config.js
rename to jest.config.cjs
index a63cd6a..5a669f1 100644
--- a/jest.config.js
+++ b/jest.config.cjs
@@ -1,6 +1,15 @@
 module.exports = {
-  preset: 'ts-jest',
+  preset: 'ts-jest/presets/default-esm',
   testEnvironment: 'node',
+  extensionsToTreatAsEsm: ['.ts'],
+  transform: {
+    '^.+\\.ts$': ['ts-jest', {
+      useESM: true,
+    }],
+  },
+  moduleNameMapper: {
+    '^(\\.{1,2}/.*)\\.js$': '$1',
+  },
   roots: ['<rootDir>/tests'],
   testMatch: ['**/*.test.ts'],
   collectCoverageFrom: [
diff --git a/package-lock.json b/package-lock.json
index d5750e8..825cf15 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -9,8 +9,9 @@
       "version": "1.0.0",
       "license": "MIT",
       "dependencies": {
-        "@modelcontextprotocol/sdk": "^0.4.0",
-        "@xenova/transformers": "^2.17.2"
+        "@modelcontextprotocol/sdk": "^1.12.1",
+        "@xenova/transformers": "^2.17.2",
+        "tsx": "^4.19.4"
       },
       "bin": {
         "private-journal-mcp": "dist/index.js"
@@ -557,6 +558,406 @@
       "dev": true,
       "license": "MIT"
     },
+    "node_modules/@esbuild/aix-ppc64": {
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+      "cpu": [
+        "ppc64"
+      ],
+      "license": "MIT",
+      "optional": true,
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+        "aix"
+      ],
+      "engines": {
+        "node": ">=18"
+      }
+    },
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+      "cpu": [
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@@ -1178,14 +1579,25 @@
       }
     },
     "node_modules/@modelcontextprotocol/sdk": {
-      "version": "0.4.0",
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+      "license": "MIT",
+      "funding": {
+        "url": "https://github.com/privatenumber/resolve-pkg-maps?sponsor=1"
+      }
+    },
     "node_modules/resolve.exports": {
       "version": "2.0.3",
       "resolved": "https://registry.npmjs.org/resolve.exports/-/resolve.exports-2.0.3.tgz",
@@ -5268,6 +6253,22 @@
         "url": "https://github.com/sponsors/isaacs"
       }
     },
+    "node_modules/router": {
+      "version": "2.2.0",
+      "resolved": "https://registry.npmjs.org/router/-/router-2.2.0.tgz",
+      "integrity": "sha512-nLTrUKm2UyiL7rlhapu/Zl45FwNgkZGaCpZbIHajDYgwlJCOzLSk+cIPAnsEqV955GjILJnKbdQC1nVPz+gAYQ==",
+      "license": "MIT",
+      "dependencies": {
+        "debug": "^4.4.0",
+        "depd": "^2.0.0",
+        "is-promise": "^4.0.0",
+        "parseurl": "^1.3.3",
+        "path-to-regexp": "^8.0.0"
+      },
+      "engines": {
+        "node": ">= 18"
+      }
+    },
     "node_modules/run-parallel": {
       "version": "1.2.0",
       "resolved": "https://registry.npmjs.org/run-parallel/-/run-parallel-1.2.0.tgz",
@@ -5330,6 +6331,43 @@
         "node": ">=10"
       }
     },
+    "node_modules/send": {
+      "version": "1.2.0",
+      "resolved": "https://registry.npmjs.org/send/-/send-1.2.0.tgz",
+      "integrity": "sha512-uaW0WwXKpL9blXE2o0bRhoL2EGXIrZxQ2ZQ4mgcfoBxdFmQold+qWsD2jLrfZ0trjKL6vOw0j//eAwcALFjKSw==",
+      "license": "MIT",
+      "dependencies": {
+        "debug": "^4.3.5",
+        "encodeurl": "^2.0.0",
+        "escape-html": "^1.0.3",
+        "etag": "^1.8.1",
+        "fresh": "^2.0.0",
+        "http-errors": "^2.0.0",
+        "mime-types": "^3.0.1",
+        "ms": "^2.1.3",
+        "on-finished": "^2.4.1",
+        "range-parser": "^1.2.1",
+        "statuses": "^2.0.1"
+      },
+      "engines": {
+        "node": ">= 18"
+      }
+    },
+    "node_modules/serve-static": {
+      "version": "2.2.0",
+      "resolved": "https://registry.npmjs.org/serve-static/-/serve-static-2.2.0.tgz",
+      "integrity": "sha512-61g9pCh0Vnh7IutZjtLGGpTA355+OPn2TyDv/6ivP2h/AdAVX9azsoxmg2/M6nZeQZNYBEwIcsne1mJd9oQItQ==",
+      "license": "MIT",
+      "dependencies": {
+        "encodeurl": "^2.0.0",
+        "escape-html": "^1.0.3",
+        "parseurl": "^1.3.3",
+        "send": "^1.2.0"
+      },
+      "engines": {
+        "node": ">= 18"
+      }
+    },
     "node_modules/setprototypeof": {
       "version": "1.2.0",
       "resolved": "https://registry.npmjs.org/setprototypeof/-/setprototypeof-1.2.0.tgz",
@@ -5363,7 +6401,6 @@
       "version": "2.0.0",
       "resolved": "https://registry.npmjs.org/shebang-command/-/shebang-command-2.0.0.tgz",
       "integrity": "sha512-kHxr2zZpYtdmrN1qDjrrX/Z1rR1kG8Dx+gkpK1G4eXmvXswmcE1hTWBWYUzlraYw1/yZp6YuDY77YtvbN0dmDA==",
-      "dev": true,
       "license": "MIT",
       "dependencies": {
         "shebang-regex": "^3.0.0"
@@ -5376,12 +6413,83 @@
       "version": "3.0.0",
       "resolved": "https://registry.npmjs.org/shebang-regex/-/shebang-regex-3.0.0.tgz",
       "integrity": "sha512-7++dFhtcx3353uBaq8DDR4NuxBetBzC7ZQOhmTQInHEd6bSrXdiEyzCvG07Z44UYdLShWUyXt5M/yhz8ekcb1A==",
-      "dev": true,
       "license": "MIT",
       "engines": {
         "node": ">=8"
       }
     },
+    "node_modules/side-channel": {
+      "version": "1.1.0",
+      "resolved": "https://registry.npmjs.org/side-channel/-/side-channel-1.1.0.tgz",
+      "integrity": "sha512-ZX99e6tRweoUXqR+VBrslhda51Nh5MTQwou5tnUDgbtyM0dBgmhEDtWGP/xbKn6hqfPRHujUNwz5fy/wbbhnpw==",
+      "license": "MIT",
+      "dependencies": {
+        "es-errors": "^1.3.0",
+        "object-inspect": "^1.13.3",
+        "side-channel-list": "^1.0.0",
+        "side-channel-map": "^1.0.1",
+        "side-channel-weakmap": "^1.0.2"
+      },
+      "engines": {
+        "node": ">= 0.4"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/ljharb"
+      }
+    },
+    "node_modules/side-channel-list": {
+      "version": "1.0.0",
+      "resolved": "https://registry.npmjs.org/side-channel-list/-/side-channel-list-1.0.0.tgz",
+      "integrity": "sha512-FCLHtRD/gnpCiCHEiJLOwdmFP+wzCmDEkc9y7NsYxeF4u7Btsn1ZuwgwJGxImImHicJArLP4R0yX4c2KCrMrTA==",
+      "license": "MIT",
+      "dependencies": {
+        "es-errors": "^1.3.0",
+        "object-inspect": "^1.13.3"
+      },
+      "engines": {
+        "node": ">= 0.4"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/ljharb"
+      }
+    },
+    "node_modules/side-channel-map": {
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/side-channel-map/-/side-channel-map-1.0.1.tgz",
+      "integrity": "sha512-VCjCNfgMsby3tTdo02nbjtM/ewra6jPHmpThenkTYh8pG9ucZ/1P8So4u4FGBek/BjpOVsDCMoLA/iuBKIFXRA==",
+      "license": "MIT",
+      "dependencies": {
+        "call-bound": "^1.0.2",
+        "es-errors": "^1.3.0",
+        "get-intrinsic": "^1.2.5",
+        "object-inspect": "^1.13.3"
+      },
+      "engines": {
+        "node": ">= 0.4"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/ljharb"
+      }
+    },
+    "node_modules/side-channel-weakmap": {
+      "version": "1.0.2",
+      "resolved": "https://registry.npmjs.org/side-channel-weakmap/-/side-channel-weakmap-1.0.2.tgz",
+      "integrity": "sha512-WPS/HvHQTYnHisLo9McqBHOJk2FkHO/tlpvldyrnem4aeQp4hai3gythswg6p01oSoTl58rcpiFAjF2br2Ak2A==",
+      "license": "MIT",
+      "dependencies": {
+        "call-bound": "^1.0.2",
+        "es-errors": "^1.3.0",
+        "get-intrinsic": "^1.2.5",
+        "object-inspect": "^1.13.3",
+        "side-channel-map": "^1.0.1"
+      },
+      "engines": {
+        "node": ">= 0.4"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/ljharb"
+      }
+    },
     "node_modules/signal-exit": {
       "version": "3.0.7",
       "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz",
@@ -5834,6 +6942,25 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
     },
+    "node_modules/tsx": {
+      "version": "4.19.4",
+      "resolved": "https://registry.npmjs.org/tsx/-/tsx-4.19.4.tgz",
+      "integrity": "sha512-gK5GVzDkJK1SI1zwHf32Mqxf2tSJkNx+eYcNly5+nHvWqXUJYUkWBQtKauoESz3ymezAI++ZwT855x5p5eop+Q==",
+      "license": "MIT",
+      "dependencies": {
+        "esbuild": "~0.25.0",
+        "get-tsconfig": "^4.7.5"
+      },
+      "bin": {
+        "tsx": "dist/cli.mjs"
+      },
+      "engines": {
+        "node": ">=18.0.0"
+      },
+      "optionalDependencies": {
+        "fsevents": "~2.3.3"
+      }
+    },
     "node_modules/tunnel-agent": {
       "version": "0.6.0",
       "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz",
@@ -5882,6 +7009,20 @@
         "url": "https://github.com/sponsors/sindresorhus"
       }
     },
+    "node_modules/type-is": {
+      "version": "2.0.1",
+      "resolved": "https://registry.npmjs.org/type-is/-/type-is-2.0.1.tgz",
+      "integrity": "sha512-OZs6gsjF4vMp32qrCbiVSkrFmXtG/AZhY3t0iAMrMBiAZyV9oALtXO8hsrHbMXF9x6L3grlFuwW2oAz7cav+Gw==",
+      "license": "MIT",
+      "dependencies": {
+        "content-type": "^1.0.5",
+        "media-typer": "^1.1.0",
+        "mime-types": "^3.0.0"
+      },
+      "engines": {
+        "node": ">= 0.6"
+      }
+    },
     "node_modules/typescript": {
       "version": "5.8.3",
       "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.8.3.tgz",
@@ -5946,7 +7087,6 @@
       "version": "4.4.1",
       "resolved": "https://registry.npmjs.org/uri-js/-/uri-js-4.4.1.tgz",
       "integrity": "sha512-7rKUyy33Q1yc98pQ1DAmLtwX109F7TIfWlW1Ydo8Wl1ii1SeHieeh0HHfPeL2fMXK6z0s8ecKs9frCuLJvndBg==",
-      "dev": true,
       "license": "BSD-2-Clause",
       "dependencies": {
         "punycode": "^2.1.0"
@@ -5973,6 +7113,15 @@
         "node": ">=10.12.0"
       }
     },
+    "node_modules/vary": {
+      "version": "1.1.2",
+      "resolved": "https://registry.npmjs.org/vary/-/vary-1.1.2.tgz",
+      "integrity": "sha512-BNGbWLfd0eUPabhkXUVm0j8uuvREyTh5ovRa/dyow/BqAbZJyC+5fU+IzQOzmAKzYqYRAISoRhdQr3eIZ/PXqg==",
+      "license": "MIT",
+      "engines": {
+        "node": ">= 0.8"
+      }
+    },
     "node_modules/walker": {
       "version": "1.0.8",
       "resolved": "https://registry.npmjs.org/walker/-/walker-1.0.8.tgz",
@@ -5987,7 +7136,6 @@
       "version": "2.0.2",
       "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
       "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
-      "dev": true,
       "license": "ISC",
       "dependencies": {
         "isexe": "^2.0.0"
@@ -6114,6 +7262,15 @@
       "funding": {
         "url": "https://github.com/sponsors/colinhacks"
       }
+    },
+    "node_modules/zod-to-json-schema": {
+      "version": "3.24.5",
+      "resolved": "https://registry.npmjs.org/zod-to-json-schema/-/zod-to-json-schema-3.24.5.tgz",
+      "integrity": "sha512-/AuWwMP+YqiPbsJx5D6TfgRTc4kTLjsh5SOcd4bLsfUg2RcEXrFMJl1DGgdHy2aCfsIA/cr/1JM0xcB2GZji8g==",
+      "license": "ISC",
+      "peerDependencies": {
+        "zod": "^3.24.1"
+      }
     }
   }
 }
diff --git a/package.json b/package.json
index 77f662e..65b853b 100644
--- a/package.json
+++ b/package.json
@@ -2,6 +2,7 @@
   "name": "private-journal-mcp",
   "version": "1.0.0",
   "description": "A lightweight MCP server that provides Claude with a private journaling capability to process feelings and thoughts",
+  "type": "module",
   "main": "dist/index.js",
   "bin": {
     "private-journal-mcp": "./dist/index.js"
@@ -37,8 +38,9 @@
     "typescript": "^5.0.0"
   },
   "dependencies": {
-    "@modelcontextprotocol/sdk": "^0.4.0",
-    "@xenova/transformers": "^2.17.2"
+    "@modelcontextprotocol/sdk": "^1.12.1",
+    "@xenova/transformers": "^2.17.2",
+    "tsx": "^4.19.4"
   },
   "files": [
     "dist/**/*",
diff --git a/src/index.ts b/src/index.ts
index b5b68cd..5a2a0cb 100644
--- a/src/index.ts
+++ b/src/index.ts
@@ -4,8 +4,8 @@
 // ABOUTME: Handles command line arguments and starts the server
 
 import * as path from 'path';
-import { PrivateJournalServer } from './server';
-import { resolveProjectJournalPath } from './paths';
+import { PrivateJournalServer } from './server.js';
+import { resolveProjectJournalPath } from './paths.js';
 
 function parseArguments(): string {
   const args = process.argv.slice(2);
diff --git a/src/journal.ts b/src/journal.ts
index 82597cc..c7cb11b 100644
--- a/src/journal.ts
+++ b/src/journal.ts
@@ -3,9 +3,9 @@
 
 import * as fs from 'fs/promises';
 import * as path from 'path';
-import { JournalEntry } from './types';
-import { resolveUserJournalPath } from './paths';
-import { EmbeddingService, EmbeddingData } from './embeddings';
+import { JournalEntry } from './types.js';
+import { resolveUserJournalPath } from './paths.js';
+import { EmbeddingService, EmbeddingData } from './embeddings.js';
 
 export class JournalManager {
   private projectJournalPath: string;
diff --git a/src/search.ts b/src/search.ts
index 9fb679e..28cd3e2 100644
--- a/src/search.ts
+++ b/src/search.ts
@@ -1,10 +1,10 @@
-// ABOUTME: Journal search functionality with vector similarity and text matching
-// ABOUTME: Provides unified search across project and user journal entries
+// ABOUTME: Semantic search functionality for journal entries using embeddings
+// ABOUTME: Provides natural language search across journal content
 
 import * as fs from 'fs/promises';
 import * as path from 'path';
-import { EmbeddingService, EmbeddingData } from './embeddings';
-import { resolveUserJournalPath, resolveProjectJournalPath } from './paths';
+import { EmbeddingService, EmbeddingData } from './embeddings.js';
+import { resolveUserJournalPath, resolveProjectJournalPath } from './paths.js';
 
 export interface SearchResult {
   path: string;
diff --git a/src/server.ts b/src/server.ts
index f5cf0fc..f89f312 100644
--- a/src/server.ts
+++ b/src/server.ts
@@ -7,9 +7,9 @@ import {
   CallToolRequestSchema,
   ListToolsRequestSchema,
 } from '@modelcontextprotocol/sdk/types.js';
-import { JournalManager } from './journal';
-import { ProcessFeelingsRequest, ProcessThoughtsRequest } from './types';
-import { SearchService } from './search';
+import { JournalManager } from './journal.js';
+import { ProcessFeelingsRequest, ProcessThoughtsRequest } from './types.js';
+import { SearchService } from './search.js';
 
 export class PrivateJournalServer {
   private server: Server;
@@ -23,6 +23,12 @@ export class PrivateJournalServer {
       {
         name: 'private-journal-mcp',
         version: '1.0.0',
+      },
+      {
+        capabilities: {
+          tools: {},
+          resources: {},
+        },
       }
     );
 
diff --git a/tests/embeddings.test.ts b/tests/embeddings.test.ts
index e185e66..3b28744 100644
--- a/tests/embeddings.test.ts
+++ b/tests/embeddings.test.ts
@@ -5,9 +5,9 @@ import * as fs from 'fs/promises';
 import * as path from 'path';
 import * as os from 'os';
 
-import { EmbeddingService } from '../src/embeddings';
-import { SearchService } from '../src/search';
-import { JournalManager } from '../src/journal';
+import { EmbeddingService } from '../src/embeddings.js';
+import { SearchService } from '../src/search.js';
+import { JournalManager } from '../src/journal.js';
 
 describe('Embedding and Search functionality', () => {
   let projectTempDir: string;
diff --git a/tests/journal.test.ts b/tests/journal.test.ts
index a53ddb5..a463938 100644
--- a/tests/journal.test.ts
+++ b/tests/journal.test.ts
@@ -5,7 +5,7 @@
 import * as fs from 'fs/promises';
 import * as path from 'path';
 import * as os from 'os';
-import { JournalManager } from '../src/journal';
+import { JournalManager } from '../src/journal.js';
 
 function getFormattedDate(date: Date): string {
   const year = date.getFullYear();
@@ -133,9 +133,12 @@ describe('JournalManager', () => {
     const dayDir = path.join(projectTempDir, dateString);
     const files = await fs.readdir(dayDir);
     
-    expect(files).toHaveLength(2); // .md and .embedding files
+    expect(files).toHaveLength(1); // Only .md file, no .embedding file for empty content
     
-    const filePath = path.join(dayDir, files[0]);
+    const mdFile = files.find(f => f.endsWith('.md'));
+    expect(mdFile).toBeDefined();
+    
+    const filePath = path.join(dayDir, mdFile!);
     const fileContent = await fs.readFile(filePath, 'utf8');
     
     expect(fileContent).toContain('---');
@@ -154,8 +157,11 @@ describe('JournalManager', () => {
     const dateString = getFormattedDate(today);
     const dayDir = path.join(projectTempDir, dateString);
     const files = await fs.readdir(dayDir);
-    const filePath = path.join(dayDir, files[0]);
     
+    const mdFile = files.find(f => f.endsWith('.md'));
+    expect(mdFile).toBeDefined();
+    
+    const filePath = path.join(dayDir, mdFile!);
     const fileContent = await fs.readFile(filePath, 'utf8');
     expect(fileContent).toContain(content);
   });
@@ -172,9 +178,12 @@ describe('JournalManager', () => {
     const projectDayDir = path.join(projectTempDir, dateString);
     
     const projectFiles = await fs.readdir(projectDayDir);
-    expect(projectFiles).toHaveLength(1);
+    expect(projectFiles).toHaveLength(2); // .md and .embedding files
     
-    const projectFilePath = path.join(projectDayDir, projectFiles[0]);
+    const mdFile = projectFiles.find(f => f.endsWith('.md'));
+    expect(mdFile).toBeDefined();
+    
+    const projectFilePath = path.join(projectDayDir, mdFile!);
     const projectContent = await fs.readFile(projectFilePath, 'utf8');
     
     expect(projectContent).toContain('## Project Notes');
@@ -195,9 +204,12 @@ describe('JournalManager', () => {
     const userDayDir = path.join(userTempDir, '.private-journal', dateString);
     
     const userFiles = await fs.readdir(userDayDir);
-    expect(userFiles).toHaveLength(1);
+    expect(userFiles).toHaveLength(2); // .md and .embedding files
     
-    const userFilePath = path.join(userDayDir, userFiles[0]);
+    const mdFile = userFiles.find(f => f.endsWith('.md'));
+    expect(mdFile).toBeDefined();
+    
+    const userFilePath = path.join(userDayDir, mdFile!);
     const userContent = await fs.readFile(userFilePath, 'utf8');
     
     expect(userContent).toContain('## Feelings');
@@ -224,9 +236,12 @@ describe('JournalManager', () => {
     // Check project directory
     const projectDayDir = path.join(projectTempDir, dateString);
     const projectFiles = await fs.readdir(projectDayDir);
-    expect(projectFiles).toHaveLength(1);
+    expect(projectFiles).toHaveLength(2); // .md and .embedding files
+    
+    const projectMdFile = projectFiles.find(f => f.endsWith('.md'));
+    expect(projectMdFile).toBeDefined();
     
-    const projectContent = await fs.readFile(path.join(projectDayDir, projectFiles[0]), 'utf8');
+    const projectContent = await fs.readFile(path.join(projectDayDir, projectMdFile!), 'utf8');
     expect(projectContent).toContain('## Project Notes');
     expect(projectContent).toContain('The architecture is solid');
     expect(projectContent).not.toContain('## Feelings');
@@ -234,9 +249,12 @@ describe('JournalManager', () => {
     // Check user directory
     const userDayDir = path.join(userTempDir, '.private-journal', dateString);
     const userFiles = await fs.readdir(userDayDir);
-    expect(userFiles).toHaveLength(1);
+    expect(userFiles).toHaveLength(2); // .md and .embedding files
     
-    const userContent = await fs.readFile(path.join(userDayDir, userFiles[0]), 'utf8');
+    const userMdFile = userFiles.find(f => f.endsWith('.md'));
+    expect(userMdFile).toBeDefined();
+    
+    const userContent = await fs.readFile(path.join(userDayDir, userMdFile!), 'utf8');
     expect(userContent).toContain('## Feelings');
     expect(userContent).toContain('## User Context');
     expect(userContent).toContain('## Technical Insights');
@@ -257,9 +275,12 @@ describe('JournalManager', () => {
     // Should only create user directory, not project directory
     const userDayDir = path.join(userTempDir, '.private-journal', dateString);
     const userFiles = await fs.readdir(userDayDir);
-    expect(userFiles).toHaveLength(1);
+    expect(userFiles).toHaveLength(2); // .md and .embedding files
+    
+    const userMdFile = userFiles.find(f => f.endsWith('.md'));
+    expect(userMdFile).toBeDefined();
     
-    const userContent = await fs.readFile(path.join(userDayDir, userFiles[0]), 'utf8');
+    const userContent = await fs.readFile(path.join(userDayDir, userMdFile!), 'utf8');
     expect(userContent).toContain('## World Knowledge');
     expect(userContent).toContain('Learned something interesting about databases');
     
@@ -281,9 +302,12 @@ describe('JournalManager', () => {
     // Should only create project directory, not user directory
     const projectDayDir = path.join(projectTempDir, dateString);
     const projectFiles = await fs.readdir(projectDayDir);
-    expect(projectFiles).toHaveLength(1);
+    expect(projectFiles).toHaveLength(2); // .md and .embedding files
     
-    const projectContent = await fs.readFile(path.join(projectDayDir, projectFiles[0]), 'utf8');
+    const projectMdFile = projectFiles.find(f => f.endsWith('.md'));
+    expect(projectMdFile).toBeDefined();
+    
+    const projectContent = await fs.readFile(path.join(projectDayDir, projectMdFile!), 'utf8');
     expect(projectContent).toContain('## Project Notes');
     expect(projectContent).toContain('This specific codebase pattern works well');
     
@@ -305,9 +329,12 @@ describe('JournalManager', () => {
       const customDayDir = path.join(customUserDir, dateString);
       
       const customFiles = await fs.readdir(customDayDir);
-      expect(customFiles).toHaveLength(1);
+      expect(customFiles).toHaveLength(2); // .md and .embedding files
+      
+      const customMdFile = customFiles.find(f => f.endsWith('.md'));
+      expect(customMdFile).toBeDefined();
       
-      const customContent = await fs.readFile(path.join(customDayDir, customFiles[0]), 'utf8');
+      const customContent = await fs.readFile(path.join(customDayDir, customMdFile!), 'utf8');
       expect(customContent).toContain('Testing custom path');
     } finally {
       await fs.rm(customUserDir, { recursive: true, force: true });
diff --git a/tests/paths.test.ts b/tests/paths.test.ts
index aab40d0..4000d7f 100644
--- a/tests/paths.test.ts
+++ b/tests/paths.test.ts
@@ -2,7 +2,7 @@
 // ABOUTME: Tests cross-platform fallback logic and environment handling
 
 import * as path from 'path';
-import { resolveJournalPath, resolveUserJournalPath, resolveProjectJournalPath } from '../src/paths';
+import { resolveJournalPath, resolveUserJournalPath, resolveProjectJournalPath } from '../src/paths.js';
 
 describe('Path resolution utilities', () => {
   let originalEnv: NodeJS.ProcessEnv;
diff --git a/tests/setup.ts b/tests/setup.ts
index 1d188b3..9fc0592 100644
--- a/tests/setup.ts
+++ b/tests/setup.ts
@@ -1,9 +1,16 @@
 // Global test setup
 // Mock the transformers library to avoid ES module issues in Jest
 jest.mock('@xenova/transformers', () => ({
-  pipeline: jest.fn().mockResolvedValue(
-    jest.fn().mockResolvedValue({
-      data: new Float32Array([0.1, 0.2, 0.3, 0.4, 0.5]) // Mock embedding vector
-    })
-  ),
-}));
\ No newline at end of file
+  pipeline: jest.fn().mockResolvedValue((text: string) => {
+    // Generate deterministic but different embeddings based on text content
+    const hash = text.split('').reduce((acc, char) => acc + char.charCodeAt(0), 0);
+    const embedding = new Float32Array(5);
+    for (let i = 0; i < 5; i++) {
+      embedding[i] = ((hash + i) % 100) / 100; // Normalize to 0-1 range
+    }
+    return Promise.resolve({ data: embedding });
+  }),
+}));
+
+// Mock console.error to reduce noise in test output
+global.console.error = jest.fn();
\ No newline at end of file
diff --git a/tsconfig.json b/tsconfig.json
index 964e077..2abfc13 100644
--- a/tsconfig.json
+++ b/tsconfig.json
@@ -1,12 +1,14 @@
 {
   "compilerOptions": {
     "target": "ES2020",
-    "module": "CommonJS",
+    "module": "ESNext",
+    "moduleResolution": "node",
     "lib": ["ES2020"],
     "outDir": "./dist",
     "rootDir": "./src",
     "strict": true,
     "esModuleInterop": true,
+    "allowSyntheticDefaultImports": true,
     "skipLibCheck": true,
     "forceConsistentCasingInFileNames": true,
     "declaration": true,