accept fasta file for load_genomic_breaks()

[johannesnicolaus]

Currently it only takes BSgenome object

[charles-plessy]

Yes, something like this:

.make_seq_info <- function(genome.file, genome.name=NA) {
  genome.obj <- readDNAStringSet(genome.file)
  genome(genome.obj) <- genome.name
  seqinfo(genome.obj)
}

may be enough when only seqinfo is needed.