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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(assess_immune_response)
export(categorize_TMB)
export(compute_CC_pairs)
export(compute_CCpair_score)
export(compute_LR_pairs)
export(compute_TF_activity)
export(compute_cell_fractions)
export(compute_pathway_activity)
export(compute_scores_immune_response)
export(explore_biomarkers)
export(predict_immune_response)
export(retrieve_easier_score)
import(ggplot2)
import(magrittr)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,register)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,estimateDispersions)
importFrom(DESeq2,estimateSizeFactors)
importFrom(DESeq2,getVarianceStabilizedData)
importFrom(ROCR,performance)
importFrom(ROCR,plot)
importFrom(ROCR,prediction)
importFrom(coin,pvalue)
importFrom(decoupleR,get_collectri)
importFrom(decoupleR,run_wmean)
importFrom(dplyr,filter)
importFrom(easierData,get_HGNC_annotation)
importFrom(easierData,get_TCGA_mean_pancancer)
importFrom(easierData,get_TCGA_sd_pancancer)
importFrom(easierData,get_cor_scores_genes)
importFrom(easierData,get_group_lrpairs)
importFrom(easierData,get_intercell_networks)
importFrom(easierData,get_lr_frequency_TCGA)
importFrom(easierData,get_opt_models)
importFrom(easierData,get_opt_xtrain_stats)
importFrom(easierData,get_scores_signature_genes)
importFrom(ggpubr,annotate_figure)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,text_grob)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,recordPlot)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,segments)
importFrom(graphics,title)
importFrom(matrixStats,colSds)
importFrom(progeny,getModel)
importFrom(progeny,progeny)
importFrom(quantiseqr,run_quantiseq)
importFrom(reshape2,melt)
importFrom(rstatix,wilcox_effsize)
importFrom(rstatix,wilcox_test)
importFrom(stats,aggregate)
importFrom(stats,median)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(tibble,column_to_rownames)
importFrom(tidyr,pivot_wider)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,tail)