diff --git a/release-notes/0.12.1.md b/release-notes/0.12.1.md new file mode 100644 index 000000000..239953e19 --- /dev/null +++ b/release-notes/0.12.1.md @@ -0,0 +1,28 @@ +# Release notes for cobrapy 0.12.1 + +## New features + +* Fix/feature that allows summaries to work properly for models with multiple + exchange reactions for the same metabolite. +* Require a later optlang version so that Gurobi can now be used for quadratic + problems. +* cobrapy can now extract primal values from a wider range of solver states. + This is particularly useful to investigate problems in non-optimal states. + +## Fixes + +* Test different solvers on more text cases than previously. +* Improve the way benchmarks are run. +* Restore automatic documentation builds on readthedocs.org. +* Correct a problem in how geomtric FBA retrieved solutions. +* Update the use of pandas interface of the sampler. +* Correct the sanity checks for the new ROOM implementation. + +## Deprecated features + +## Backwards incompatible changes + +* cobrapy functions that return solution only raise `OptimizationError`s rather + than also potentially raising a `RuntimeError`. +* Linear MOMA is the new default method. It used to be MOMA which excludes GLPK + as a solver due to being a quadratic optimization problem.