testAllCI_step1.yml

name: cobratoolboxCI (merge, test, and upload)
on:
  pull_request:
    branches:
      - develop
      - master
    types: [opened, synchronize, reopened]
  workflow_dispatch:
    
permissions:
  contents: read
  
jobs:
  build:
    runs-on: self-hosted
    steps:
      - name: Check out merged PR code
        uses: actions/checkout@v4

      - name: Run MATLAB Tests
        run: |
          matlab -batch "run('initCobraToolbox.m'); run('test/testAll.m');"

      - name: Convert JUnit to CTRF
        run: |
          npx junit-to-ctrf ./testReport.junit.xml -o ./ctrf/ctrf-report.json

      - name: Upload CTRF Artifact
        uses: actions/upload-artifact@v4
        with:
          name: testReport
          path: ./ctrf/ctrf-report.json
          
      - name: Save PR Number
        run: echo "PR_NUMBER=${{ github.event.pull_request.number }}" >> $GITHUB_ENV

      - name: Upload PR Number as Artifact
        run: echo $PR_NUMBER > pr_number.txt
        shell: bash

      - name: Upload PR Number Artifact
        uses: actions/upload-artifact@v4
        with:
          name: pr_number
          path: pr_number.txt