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Done: There is a comprehensive set of benchmarks (using e.g. pytest-benchmark that can be used to decide between C bindings.
Binding options in order of feasibility:
SWIG (current)
CFFI (Lasse has a running version)
ctypes
Cython
Boost Python
N.B.: A "bottleneck" with the current interface is to retrieve the flux values for all reactions from the solver. This could also be in part to using an OrderedDict in optlang.
The text was updated successfully, but these errors were encountered:
Done: There is a comprehensive set of benchmarks (using e.g. pytest-benchmark that can be used to decide between C bindings.
Binding options in order of feasibility:
N.B.: A "bottleneck" with the current interface is to retrieve the flux values for all reactions from the solver. This could also be in part to using an
OrderedDict
in optlang.The text was updated successfully, but these errors were encountered: