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python wrapper #1

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CPernet opened this issue Jul 25, 2023 · 2 comments
Open

python wrapper #1

CPernet opened this issue Jul 25, 2023 · 2 comments
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@bendhouseart
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good first issue Good for newcomers

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@CPernet
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CPernet commented Jul 25, 2023

input: folder
output: - modalities
- total number of files per modality
- % files ignored

is it possible to distinguish ignored files which part of the spec from those not part of the spec?
@CPernet CPernet added the good first issue Good for newcomers label Jul 25, 2023
@bendhouseart
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You know the tool will only be as good as the source data :)

As you've mentioned in the readme running the validator and/or pybids on a bids dataset, then re-running it over any files present in the .bidsignore seems like a good first step. Co-opting an existing converter that does much of this work might be the fastest way forward after that as many of them index their given input folders.

@bendhouseart
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An alternative might be to write additional schema and feed it into the validator for BIDS-like data.

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