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[new feature] Support more ensembl genome, such as plants and fungi #298

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y9c opened this issue Jan 10, 2024 · 3 comments
Open

[new feature] Support more ensembl genome, such as plants and fungi #298

y9c opened this issue Jan 10, 2024 · 3 comments

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@y9c
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y9c commented Jan 10, 2024

https://plants.ensembl.org/index.html

@y9c
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y9c commented Jan 10, 2024

  • install rice reference genome by:
pyensembl install --species rice
  • install Arabidopsis reference genome by:
pyensembl install --species cress

@y9c
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y9c commented Jan 17, 2024

Hi @iskandr,

I would like to follow up if there is a plan to support more species.

@iskandr
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iskandr commented Feb 12, 2024

I'm open to it!

I closed the PR with rice support (#295) because it touched way too much code (and had some mistakes and merge conflicts). Can we add plants and fungi in a more granular fashion? And, if it requires switching between multiple source servers can we change that code first before adding new species?

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