Digital Slide Archive

All

36 repositories

DSA-WSI-DeID
Public
A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
hacktoberfest
Python
•
Apache License 2.0
•8•15•15•0•Updated Nov 26, 2024Nov 26, 2024
ImageDePHI
Public
Python
•
Apache License 2.0
•0•8•18•1•Updated Nov 26, 2024Nov 26, 2024
wsi-superpixel-guided-labeling
Public
Vue
•
Other
•5•3•31•4•Updated Nov 25, 2024Nov 25, 2024
import-tracker
Public
A Girder plugin for data import tracking in HistomicsUI
Python
•
Other
•2•2•7•1•Updated Nov 25, 2024Nov 25, 2024
HistomicsTK
Public
A Python toolkit for pathology image analysis algorithms.
python machine-learning computer-vision histology medical-image-processing bioimage-informatics digital-slide-archive
Python
•
Apache License 2.0
•117•395•22•3•Updated Nov 25, 2024Nov 25, 2024
HistomicsUI
Public
A Girder plugin for pathology image annotations and analysis.
python histology digital-slide-archive bioimage-infomatics
JavaScript
•
Apache License 2.0
•20•57•49•2•Updated Nov 22, 2024Nov 22, 2024
large-image-utilities
Public
Experimental utilities for use with large_image
Python
•
Apache License 2.0
•1•3•0•0•Updated Nov 21, 2024Nov 21, 2024
girder_volview
Public
Python
•
Other
•2•3•4•0•Updated Nov 18, 2024Nov 18, 2024
dive-dsa
Public
DIVE for Digital Slide Archive
Vue
•
Apache License 2.0
•0•0•3•3•Updated Nov 13, 2024Nov 13, 2024
digital_slide_archive
Public
The official deployment of the Digital Slide Archive and HistomicsTK.
hacktoberfest histology bioimage-informatics digital-slide-archive histomicstk
Python
•
Apache License 2.0
•50•111•27•0•Updated Nov 11, 2024Nov 11, 2024
histomicstk-extras
Public
Python
•
Other
•2•0•0•0•Updated Oct 2, 2024Oct 2, 2024
HistomicsStream
Public
A whole-slide image reader for TensorFlow
Python
•
Apache License 2.0
•6•22•9•0•Updated Oct 1, 2024Oct 1, 2024
superpixel-classification
Public
A test cli for classifying superpixels with arbitrary labels
hacktoberfest
Python
•
Other
•2•5•0•0•Updated Sep 24, 2024Sep 24, 2024
girder_assetstore
Public
A Girder plugin for connecting remote Girder instances as Assetstores
Python
•
Other
•0•0•3•0•Updated Sep 19, 2024Sep 19, 2024
ALBench
Public
Benchmarking tool for evaluating Active Learning strategies for machine learning
Python
•
Apache License 2.0
•3•5•3•0•Updated Sep 4, 2024Sep 4, 2024
histomics_load_testing
Public
HCL
•
Apache License 2.0
•0•0•3•0•Updated Jul 18, 2024Jul 18, 2024
tifftools
Public
Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
Python
•
Other
•5•49•4•0•Updated Apr 25, 2024Apr 25, 2024
girder-client-mount
Public
Python
•
Apache License 2.0
•0•1•0•0•Updated Apr 1, 2024Apr 1, 2024
girder-clamav
Public
Python
•
Other
•0•0•0•0•Updated Mar 28, 2024Mar 28, 2024
annotation-tracker
Public
A Girder plugin for annotation tracking in HistomicsUI
JavaScript
•
Other
•0•4•2•2•Updated Feb 15, 2024Feb 15, 2024
histoqc-dsa-plugin
Public
Python
•2•1•3•0•Updated Feb 1, 2024Feb 1, 2024
dsa-run-custom-ai-models
Public
Python
•2•2•2•0•Updated Dec 15, 2023Dec 15, 2023
histomics-tour
Public
Python
•
Other
•0•0•0•2•Updated Aug 1, 2023Aug 1, 2023
large_image_source_isyntax
Public
A large_image source using the Philips library for isyntax files
Python
•
Apache License 2.0
•0•2•0•0•Updated Jun 16, 2023Jun 16, 2023
HistomicsDetect
Public
A package for cell detection models using TensorFlow
Python
•
Apache License 2.0
•1•3•10•0•Updated Mar 20, 2023Mar 20, 2023
CNNCellDetection
Public
This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei in histology images
Python
•
Apache License 2.0
•3•27•0•22•Updated Dec 8, 2022Dec 8, 2022
ImageDePHI-Phase-I
Public
Whole Slide Image Deidentification for PHI
Python
•
Apache License 2.0
•0•2•13•0•Updated Aug 27, 2021Aug 27, 2021
HTAN
Public
Python
•
Other
•1•0•4•0•Updated Jun 7, 2021Jun 7, 2021
digitalslidearchive.info
Public
Documentation for installing and maintaining the Digital Slide Archive, Girder, and HistomicsTK
Jupyter Notebook
•0•10•2•0•Updated Jul 8, 2020Jul 8, 2020
DigitalSlideArchive.github.io
Public
This is a redirect to the main documentation
HTML
•0•0•0•0•Updated Mar 11, 2020Mar 11, 2020