{"payload":{"pageCount":6,"repositories":[{"type":"Public","name":"nf-modules","owner":"EBI-Metagenomics","isFork":false,"description":"Microbiome Informatics NF modules and sufworkflows","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":3,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":[0,5,3,0,0,5,7,1,15,20,10,24,7,19,15,13,4,0,0,0,0,0,0,15,0,0,1,9,1,0,1,0,0,1,7,0,0,0,0,4,7,4,0,1,17,0,0,0,5,4,1,6],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-04T07:56:35.334Z"}},{"type":"Public","name":"miassembler","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,0,0,0,3,0,0,1,2,10,10,7,0,5,4,0,3,3,6,3,32,2,0,5,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T15:46:49.477Z"}},{"type":"Public","name":"kegg-pathways-completeness-tool","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":9,"forksCount":2,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,24,17,14],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T14:42:22.747Z"}},{"type":"Public","name":"mgnifams","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":[5,6,7,15,15,0,0,0,0,0,0,0,6,21,9,8,8,0,6,25,31,11,11,19,1,1,2,15,6,9,7,12,0,0,1,0,1,3,3,0,8,7,11,18,18,16,14,22,3,24,21,12],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T12:25:51.947Z"}},{"type":"Public","name":"mobilome-annotation-pipeline","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":22,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T11:17:37.089Z"}},{"type":"Public","name":"mettannotator","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T14:32:47.051Z"}},{"type":"Public","name":"holofood-database","owner":"EBI-Metagenomics","isFork":false,"description":"HoloFood is a project investigating sustainable food production through hologenomics. This Django app is the data portal where samples and other datasets from the project are made publicly available.","allTopics":["python","metagenomics","metabolomics","omics"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T13:42:19.552Z"}},{"type":"Public","name":"causal_multi-omics_recommender","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,0,0,1,0,5,1,19,0,0,0,0,8,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T13:17:18.332Z"}},{"type":"Public","name":"fetch_tool","owner":"EBI-Metagenomics","isFork":false,"description":"Tool which allows you to fetch RAW read files from the European Nucleotide Archive (ENA)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":4,"starsCount":2,"forksCount":2,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,8,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T15:26:41.619Z"}},{"type":"Public","name":"HoloFoodR","owner":"EBI-Metagenomics","isFork":false,"description":"R interface for HoloFood resource","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":3,"starsCount":1,"forksCount":0,"license":"Artistic License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T18:02:53.341Z"}},{"type":"Public","name":"genome_uploader","owner":"EBI-Metagenomics","isFork":false,"description":"Python script to upload bins and MAGs to ENA (European Nucleotide Archive)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":20,"forksCount":3,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T14:09:06.124Z"}},{"type":"Public","name":"mgnifams-site","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T10:18:28.455Z"}},{"type":"Public","name":"amplicon-pipeline","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-21T17:09:54.155Z"}},{"type":"Public","name":"bioconda-recipes-kegg-pathways-completeness","owner":"EBI-Metagenomics","isFork":true,"description":"Conda recipes for the bioconda channel.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3130,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-21T14:23:32.646Z"}},{"type":"Public","name":"MGnifyR","owner":"EBI-Metagenomics","isFork":false,"description":"R package for searching, downloading and analysis of EBI MGnify metagenomics data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":12,"starsCount":19,"forksCount":10,"license":"Artistic License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-20T14:29:51.212Z"}},{"type":"Public","name":"ebi-metagenomics-client","owner":"EBI-Metagenomics","isFork":false,"description":"This repos contains the MGnify web client","allTopics":["javascript","client","website","webpack","backbone"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":10,"issueCount":0,"starsCount":4,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-19T15:44:21.694Z"}},{"type":"Public","name":"notebooks","owner":"EBI-Metagenomics","isFork":false,"description":"MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)","allTopics":["python","documentation","metagenomics","comparative-genomics","notebooks","rlang","quarto","shinyproxy","jupyterlab-extension","biohackeu22","docker","jupyter"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":3,"issueCount":3,"starsCount":10,"forksCount":9,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-19T10:29:18.135Z"}},{"type":"Public","name":"assembly_uploader","owner":"EBI-Metagenomics","isFork":false,"description":"Upload of metagenome and metatranscriptome assemblies to ENA","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-14T13:03:59.459Z"}},{"type":"Public","name":"shallowmapping","owner":"EBI-Metagenomics","isFork":false,"description":"Shallow-shotgun mapping pipeline","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-14T09:33:01.346Z"}},{"type":"Public","name":"containers","owner":"EBI-Metagenomics","isFork":false,"description":"Repository to contain containers used by EBI Microbiome Informatics","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-10T11:15:54.313Z"}},{"type":"Public","name":"emgapi","owner":"EBI-Metagenomics","isFork":false,"description":"MGnify RESTful API","allTopics":["api","django","resource","django-rest-framework","jsonapi"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":4,"starsCount":10,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-10T09:53:42.768Z"}},{"type":"Public","name":"genomes-catalogue-pipeline","owner":"EBI-Metagenomics","isFork":false,"description":"MGnify genome analysis pipeline","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":7,"starsCount":92,"forksCount":21,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-06T09:44:21.340Z"}},{"type":"Public","name":"blog","owner":"EBI-Metagenomics","isFork":false,"description":"EBI metagenomics blog","allTopics":[],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T16:41:32.020Z"}},{"type":"Public","name":"miniqc-pipeline","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T14:35:14.132Z"}},{"type":"Public","name":"mgnify-pipelines-toolkit","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T14:05:04.124Z"}},{"type":"Public","name":"3DPatch","owner":"EBI-Metagenomics","isFork":true,"description":"A web application for the calculation and visualization of evolutionary conservation in protein 3D structures.","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T12:22:06.188Z"}},{"type":"Public","name":"deciphon","owner":"EBI-Metagenomics","isFork":false,"description":"Deciphon related projects","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-17T11:56:30.945Z"}},{"type":"Public","name":"fasta-reader-py","owner":"EBI-Metagenomics","isFork":false,"description":"FASTA file reader.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T12:57:12.517Z"}},{"type":"Public","name":"genomes-generation","owner":"EBI-Metagenomics","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T12:00:27.009Z"}},{"type":"Public","name":"hmmer3","owner":"EBI-Metagenomics","isFork":false,"description":"HMMER (version 3) related projects","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T11:17:27.831Z"}}],"repositoryCount":160,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"EBI-Metagenomics repositories"}