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    24 repositories

    • PLMeAE

      Public
      Python
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • DePLM

      Public
      Python
      •1•4•0•0•Updated Dec 9, 2024Dec 9, 2024

    • SciToolAgent

      Public
      SciToolAgent: A Knowledge Graph-Driven Scientific Agent for Multi-Tool Integration
      Python
      •
      MIT License
      •1•4•0•0•Updated Dec 3, 2024Dec 3, 2024

    • SciRAGEval

      Public
      0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • SciKnowEval

      Public
      SciKnowEval: Evaluating Multi-level Scientific Knowledge of Large Language Models
      benchmarkchemistrybiologyevaluationdatasetlanguage-modelscientific-researchllm
      Python
      •2•16•0•0•Updated Nov 1, 2024Nov 1, 2024

    • MedIE-Instruct

      Public
      0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • InstructProtein

      Public
      Code and data for the ACL2024 paper "InstructProtein: Aligning Human and Protein Language via Knowledge Instruction".
      Python
      •
      MIT License
      •0•12•0•0•Updated Aug 28, 2024Aug 28, 2024

    • KnowRLM

      Public
      Python
      •1•6•2•0•Updated Aug 8, 2024Aug 8, 2024

    • Scientific-LLM-Survey

      Public
      Scientific Large Language Models: A Survey on Biological & Chemical Domains
      genometextmoleculesurveyproteincellscience-researchmultimodallarge-language-modelsllms
      26•258•1•2•Updated Jul 24, 2024Jul 24, 2024

    • hicai-zju.github.io

      Public
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 1, 2024Apr 1, 2024

    • Prot-Text-Competition

      Public
      NeurIPS 2024 Competition - Scientific Large Language Models for Protein Sequence Understanding
      0•1•0•0•Updated Mar 25, 2024Mar 25, 2024

    • KANO

      Public
      Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".
      Python
      •
      MIT License
      •24•112•3•0•Updated Mar 18, 2024Mar 18, 2024

    • PromptProtein-MindSpore

      Public
      MindSpore implementation for paper "Multi-level Protein Structure Pre-training with Prompt Learning"
      Python
      •0•1•0•0•Updated Feb 27, 2024Feb 27, 2024

    • Mol-Instructions

      Public
      Code, data and models for the ICLR2024 paper "Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models."
      Python
      •
      MIT License
      •16•1•0•0•Updated Feb 10, 2024Feb 10, 2024

    • KANO-MindSpore

      Public
      MindSpore implementation for paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt"
      moleculeknowledge-graphpretrained-modelsgraph-neural-networksmindspore
      Python
      •
      MIT License
      •0•2•0•0•Updated Dec 28, 2023Dec 28, 2023

    • iMoLD

      Public
      Official implementation for Learning Invariant Molecular Representation in Latent Discrete Space (NeurIPS 2023)
      out-of-distributionmolecular-representation-learning
      Python
      •
      MIT License
      •2•21•3•0•Updated Oct 16, 2023Oct 16, 2023

    • PromptProtein

      Public
      Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]
      Python
      •
      MIT License
      •9•32•4•0•Updated Aug 5, 2023Aug 5, 2023

    • GS-Meta

      Public
      Code and Data for the paper: Graph Sampling-based Meta-Learning for Molecular Property Prediction [IJCAI2023]
      meta-learningfew-shot-learningmolecular-property-prediction
      Python
      •
      MIT License
      •2•18•0•0•Updated Jun 29, 2023Jun 29, 2023

    • ProteinPromptEngineering

      Public
      Prompt Engineering for Proteins
      HTML
      •
      MIT License
      •1•0•0•0•Updated May 6, 2023May 6, 2023

    • OpenProtein

      Public
      Open-Protein is an open source pre-training platform that supports multiple protein pre-training models and downstream tasks.
      proteinpre-trainingdeep-learningpytorch
      Python
      •
      Open Software License 3.0
      •1•18•0•0•Updated Apr 14, 2023Apr 14, 2023

    • SpaTalk

      Public
      Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
      HTML
      •
      GNU General Public License v3.0
      •18•0•0•0•Updated Dec 16, 2022Dec 16, 2022

    • OntoProtein

      Public
      Code and datasets for the ICLR2022 paper "OntoProtein: Protein Pretraining With Gene Ontology Embedding"
      Python
      •
      MIT License
      •22•0•0•0•Updated Apr 24, 2022Apr 24, 2022

    • KCL

      Public
      Code and Data for the paper: Molecular Contrastive Learning with Chemical Element Knowledge Graph [AAAI 2022]
      Python
      •
      MIT License
      •11•0•0•0•Updated Apr 19, 2022Apr 19, 2022

    • scDeepSort

      Public
      Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
      Python
      •
      GNU General Public License v3.0
      •18•0•0•0•Updated Sep 10, 2021Sep 10, 2021