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    63 repositories

    • InfOmics

      Public
      InfOmics website
      SCSS
      •2•1•0•0•Updated Sep 25, 2024Sep 25, 2024

    • APBIO

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • PanDelos-frags

      Public
      A version of PanDelos that discovers pangenomic content in fragmented genomes
      Java
      •
      MIT License
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • EasyCircR

      Public
      Perl
      •
      MIT License
      •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • CRISPRme

      Public
      Python
      •
      Other
      •8•2•0•0•Updated Feb 28, 2024Feb 28, 2024

    • PanDelos

      Public
      A dictionary-based method for pan-genomic contents discovery.
      Java
      •
      MIT License
      •3•3•0•0•Updated Nov 24, 2023Nov 24, 2023

    • ADAIR-Project

      Public
      This repository contains the scripts used within ADAIR, an EU Joint Programme - Neurodegenerative Disease Research (JPND) project. This research was supported by the ADAIR project (grant #JPND2019-466-037)
      R
      •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

    • APDB

      Public
      HTML
      •
      MIT License
      •2•0•0•0•Updated May 12, 2023May 12, 2023

    • Esearch3D

      Public
      R
      •
      MIT License
      •2•3•0•0•Updated Apr 19, 2023Apr 19, 2023

    • DiGAS

      Public
      A novel computational model for identifying genomic elements (from single exon to entire genomic regions) that are linked to a given phenotypic condition (i.e. a disease) investigating for single nucleotide polymorphisms (SNP).
      snpsgenomics
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • PanDelos-frags-SUPP

      Public
      This repository contains scripts to run the analyses performed in the methodological paper PanDelos-frags (tool available at InfOmics/PanDelos-frags)
      Jupyter Notebook
      •0•0•0•0•Updated Mar 7, 2023Mar 7, 2023

    • RI

      Public
      RI is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints.
      C++
      •
      Other
      •10•19•1•1•Updated Jul 11, 2022Jul 11, 2022

    • PANPROVA

      Public
      PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies
      C++
      •
      MIT License
      •0•7•0•0•Updated May 3, 2022May 3, 2022

    • stardust

      Public
      R
      •
      MIT License
      •2•3•1•0•Updated Apr 27, 2022Apr 27, 2022

    • FocusSearchCpp

      Public
      C++ implementation of FocusSearch (originally implemented in Modula2 by Ullmann)
      C++
      •
      MIT License
      •3•2•0•0•Updated Apr 27, 2022Apr 27, 2022

    • rCASC

      Public
      rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
      R
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Apr 24, 2022Apr 24, 2022

    • Simpati

      Public
      Pathway-based classifier exploits patient similarity network paradigm for interpretability and explainability
      R
      •
      Other
      •2•0•0•0•Updated Jan 26, 2022Jan 26, 2022

    • CRISPRitz

      Public
      Tool package to perform in-silico CRISPR analysis and assessment
      Python
      •
      Other
      •9•3•0•0•Updated Nov 17, 2021Nov 17, 2021

    • TEDAR

      Public
      Detection of adverse drug reactions in pharmacovigilance spontaneous reports
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2021Sep 16, 2021

    • MUVIG

      Public
      Imaging genetics workflow to find Parkinson's Disease potential genetic biomarkers.
      rjupyter-notebook
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Aug 24, 2021Aug 24, 2021

    • MiningPDGeneticsImagingTutorial

      Public
      ICHI 2021 Tutorial - Mining genetic, transcriptomic, and imaging data in Parkinson’s disease
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 11, 2021Aug 11, 2021

    • GRAFIMO

      Public
      Graph-based Finding of Individual Motif Occurrences
      Python
      •
      MIT License
      •0•5•0•0•Updated Jul 6, 2021Jul 6, 2021

    • LErNet

      Public
      LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis
      R
      •
      MIT License
      •1•0•0•0•Updated Jun 15, 2021Jun 15, 2021

    • InfOmics-website2.0

      Public archive
      website restyling
      SCSS
      •0•0•0•0•Updated Jun 3, 2021Jun 3, 2021

    • PLB2020

      Public
      Materials of the course Programming Laboratory for Bioinformatics 2020-21
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated May 24, 2021May 24, 2021

    • grapes-dd

      Public
      C++
      •
      MIT License
      •1•0•0•0•Updated Mar 24, 2021Mar 24, 2021

    • RI-DS

      Public
      A subgraph isomorphism algorithm.
      C++
      •
      MIT License
      •5•13•0•0•Updated Feb 12, 2021Feb 12, 2021

    • IGTools

      Public
      Infogenomics Tools: A Computational Suite for Informational Analyses of Genomes.
      Java
      •
      MIT License
      •1•0•1•0•Updated Nov 11, 2020Nov 11, 2020

    • GRAPES

      Public
      A software for parallel searching on biological graphs targeting multi-core architectures.
      C++
      •
      MIT License
      •0•1•0•0•Updated Oct 28, 2020Oct 28, 2020

    • RI-centralities

      Public
      A version of RI based on network centrality measures
      C++
      •
      Other
      •0•0•0•0•Updated Jul 17, 2020Jul 17, 2020