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    62 repositories

    • qiime-pipeline

      Public
      MG-RAST embedded QIIME pipeline using CWL
      Python
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Oct 16, 2024Oct 16, 2024

    • anl-seq-service

      Public
      Shell
      •1•1•3•0•Updated Apr 26, 2024Apr 26, 2024

    • MG-RAST-infrastructure

      Public
      CoreOS/Fleet Infrastructure for MG-RAST
      Shell
      •2•3•0•0•Updated May 23, 2023May 23, 2023

    • MG-RAST

      Public
      The MG-RAST Backend -- the API server
      metagenomicsmetagenomic-analysismetagenome-statistics
      Perl
      •
      BSD 2-Clause "Simplified" License
      •28•45•4•1•Updated Apr 27, 2023Apr 27, 2023

    • pipeline

      Public
      The MG-RAST pipeline
      metagenomic-analysis
      Common Workflow Language
      •
      BSD 2-Clause "Simplified" License
      •19•24•0•0•Updated Nov 30, 2022Nov 30, 2022

    • SequenceCenter

      Public
      Sequencing Center Data Management App
      JavaScript
      •2•0•0•1•Updated Mar 24, 2022Mar 24, 2022

    • myM5NR

      Public
      M5NRv2 -- non-redundant protein and rRNA database integration
      protein-sequencesrna-seq-data
      Perl
      •
      BSD 2-Clause "Simplified" License
      •3•3•0•0•Updated Nov 11, 2021Nov 11, 2021

    • MG-RASTv4

      Public
      The MG-RAST frontend -- the JavaScript web site
      HTML
      •
      BSD 2-Clause "Simplified" License
      •8•8•8•0•Updated Nov 5, 2021Nov 5, 2021

    • MG-RAST-Tools

      Public
      Repository of script tools, examples, and contributed code for using the MG-RAST API
      Python
      •
      BSD 2-Clause "Simplified" License
      •26•26•2•2•Updated Mar 22, 2021Mar 22, 2021

    • DRISEE

      Public
      duplicate read inferred sequencing error estimator
      Python
      •
      Other
      •3•9•1•1•Updated Feb 4, 2021Feb 4, 2021

    • Shock

      Public
      An object store for scientific data
      Go
      •
      BSD 2-Clause "Simplified" License
      •23•51•3•0•Updated Jan 28, 2021Jan 28, 2021

    • AWE

      Public
      workflow and resource management system for bioinformatics data analysis
      multi-cloudmg-rastworkflowshockawe
      Go
      •
      BSD 2-Clause "Simplified" License
      •21•69•1•0•Updated Oct 29, 2020Oct 29, 2020

    • tech-report

      Public
      MG-RAST manual and documentation
      metagenomicsmetagenomic-analysismg-rast
      TeX
      •
      BSD 2-Clause "Simplified" License
      •11•2•0•0•Updated Jun 4, 2020Jun 4, 2020

    • CWL-Tools

      Public
      CWL Tool repository
      Common Workflow Language
      •0•1•0•0•Updated Jun 2, 2020Jun 2, 2020

    • Skyport2-Workflows-Tutorial

      Public
      Shell
      •0•0•0•0•Updated Dec 11, 2019Dec 11, 2019

    • ebi-submitter

      Public
      Tools for submitting public MG-RAST jobs to the EBI's ENA archive
      Perl
      •2•1•0•0•Updated Nov 15, 2019Nov 15, 2019

    • autoskewer

      Public
      Repository for wrapper scripts for adapter trimming of high throughput sequence data, mostly illumina.
      Python
      •
      BSD 2-Clause "Simplified" License
      •4•1•0•0•Updated Nov 13, 2019Nov 13, 2019

    • go-rwmutex

      Public
      go library of a read-write mutex
      Go
      •0•0•0•0•Updated Aug 30, 2019Aug 30, 2019

    • go-shock-client

      Public
      go client library for Shock
      Go
      •2•2•0•0•Updated Aug 28, 2019Aug 28, 2019

    • Retina

      Public
      JavaScript library used in MG-RAST and skycore
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •5•3•0•0•Updated Aug 23, 2019Aug 23, 2019

    • awe-monitor

      Public
      Monitor for the AWE server
      JavaScript
      •1•0•0•0•Updated Jun 20, 2019Jun 20, 2019

    • API-testing

      Public
      test script and data for MG-RAST API tests
      Python
      •3•0•0•0•Updated May 16, 2019May 16, 2019

    • golib

      Public
      Go
      •
      BSD 2-Clause "Simplified" License
      •4•2•0•0•Updated May 10, 2019May 10, 2019

    • Skyport2

      Public
      framework for large scale data management and reproducible multi-cloud workflow execution
      cloud-computingmulti-cloudmg-rastaweshock
      Perl
      •
      BSD 2-Clause "Simplified" License
      •6•5•2•0•Updated Apr 9, 2019Apr 9, 2019

    • DataManager

      Public
      Python
      •0•0•0•0•Updated Apr 9, 2019Apr 9, 2019

    • authServer

      Public
      oAuth authentication server with rights management
      Perl
      •2•0•0•0•Updated Mar 11, 2019Mar 11, 2019

    • skewer

      Public
      C++
      •
      MIT License
      •17•0•0•0•Updated Oct 3, 2018Oct 3, 2018

    • MG-RAST-exporter

      Public
      Go
      •1•0•0•0•Updated Aug 28, 2018Aug 28, 2018

    • assembly-and-clustering

      Public
      Assembly and clustering workflow
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Aug 10, 2018Aug 10, 2018

    • amplicon

      Public
      Common Workflow Language
      •3•1•0•1•Updated Jun 22, 2018Jun 22, 2018