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    • A fork to create the CFDECoauthorNetwork.
      JavaScript
      Other
      13090Updated Feb 27, 2025Feb 27, 2025
    • TypeScript
      00307Updated Feb 26, 2025Feb 26, 2025
    • Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.
      TypeScript
      GNU General Public License v3.0
      13000Updated Feb 26, 2025Feb 26, 2025
    • archs4dx

      Public
      JavaScript
      Apache License 2.0
      0070Updated Feb 26, 2025Feb 26, 2025
    • A repository for the Playbook Workflow Builder project.
      TypeScript
      Creative Commons Attribution 4.0 International
      1811390Updated Feb 25, 2025Feb 25, 2025
    • Signature Commons LINCS Repo
      HTML
      3390Updated Feb 24, 2025Feb 24, 2025
    • blitzgsea

      Public
      Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.
      Jupyter Notebook
      Apache License 2.0
      94110Updated Feb 24, 2025Feb 24, 2025
    • Docker containers of preconfigured servers and web application stacks.
      TypeScript
      3300Updated Feb 24, 2025Feb 24, 2025
    • Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.
      JavaScript
      Other
      13751Updated Feb 20, 2025Feb 20, 2025
    • archs4r

      Public
      R package to load and query ARCHS4 data in R
      R
      Apache License 2.0
      0100Updated Feb 19, 2025Feb 19, 2025
    • dokku

      Public
      Ma'ayanlab dokku server admin and user guide
      Shell
      Other
      0201Updated Feb 14, 2025Feb 14, 2025
    • Python
      Apache License 2.0
      0010Updated Feb 12, 2025Feb 12, 2025
    • GeneSetCart is an interactive web-based platform that enables investigators to gather gene sets from various sources; augment these sets with gene-gene co-expression correlations and protein-protein interactions; perform set operations on these sets such as union, consensus, and intersection; and visualize and analyze these gene sets.
      TypeScript
      GNU General Public License v3.0
      0040Updated Feb 10, 2025Feb 10, 2025
    • archs4py

      Public
      Python package to load and query ARCHS4 data
      Python
      Apache License 2.0
      31720Updated Feb 6, 2025Feb 6, 2025
    • Jupyter Notebook
      0020Updated Jan 24, 2025Jan 24, 2025
    • KnowledgeGraph Demo
      Jupyter Notebook
      11000Updated Jan 23, 2025Jan 23, 2025
    • prismexp

      Public
      Advanced gene function prediction
      Python
      Apache License 2.0
      0720Updated Jan 22, 2025Jan 22, 2025
    • Remake of Genes2WordCloud
      JavaScript
      0000Updated Jan 15, 2025Jan 15, 2025
    • ChEA-KG

      Public
      Demo of how to build a transcription factor KG using the KG UI
      Jupyter Notebook
      11000Updated Jan 14, 2025Jan 14, 2025
    • Jupyter Notebook
      102301Updated Jan 6, 2025Jan 6, 2025
    • Simple hypothesis page, much simpler just to show PrismExp results
      Jupyter Notebook
      Apache License 2.0
      0000Updated Dec 20, 2024Dec 20, 2024
    • rummagene

      Public
      Python
      Other
      3960Updated Dec 18, 2024Dec 18, 2024
    • Python Jupyter notebooks for Enrichr species databases
      Jupyter Notebook
      0300Updated Dec 11, 2024Dec 11, 2024
    • rummageo

      Public
      Jupyter Notebook
      Other
      3210Updated Dec 11, 2024Dec 11, 2024
    • Appyter for enrichr canvases, scatter plots, and Manhattan plots
      Jupyter Notebook
      2030Updated Dec 3, 2024Dec 3, 2024
    • Java
      2000Updated Dec 3, 2024Dec 3, 2024
    • A PostgREST powered DRS server
      PLpgSQL
      Other
      0000Updated Nov 21, 2024Nov 21, 2024
    • Jupyter Notebook
      0030Updated Nov 19, 2024Nov 19, 2024
    • nbviewer

      Public
      nbconvert as a web service: Render Jupyter Notebooks as static web pages
      Python
      Other
      557000Updated Nov 12, 2024Nov 12, 2024
    • biojupies

      Public
      Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
      HTML
      Other
      301114242Updated Nov 12, 2024Nov 12, 2024