Repositories list

• ProHap_Graph

  Public
  Pipeline to transform the ProHap / ProVar files and PSM lists into a Neo4j graph database

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• ProHap

  Public
  Proteogenomics database-generation tool for protein haplotypes and variants

  haplotypesproteogenomicsprotein-database-generation

  Python

  •

  MIT License

  •3•11•4•0•Updated Jun 19, 2025Jun 19, 2025

• peptides-modifications-matching

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• ProHapExplorer

  Public
  Svelte

  •

  MIT License

  •0•0•0•0•Updated Jun 1, 2025Jun 1, 2025

• ProHapDatabaseAnalysis

  Public
  Pipeline to analyze protein databases created by ProHap / ProVar

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Mar 20, 2025Mar 20, 2025

• ProHap_PeptideAnnotator

  Public
  Pipeline to annotate peptide identifications when using protein databases made by of ProHap / ProVar

  Python

  •

  MIT License

  •0•2•0•0•Updated Mar 13, 2025Mar 13, 2025

• PeptideShaker_tutorial

  Public
  Tutorial for the navigation of proteomics identification results using PeptideShaker.

  0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• py-pgatk-prohap

  Public
  Python tools for proteogenomics analysis toolkit

  Python

  •

  Apache License 2.0

  •12•0•0•0•Updated Apr 26, 2024Apr 26, 2024

• FindingHaploSignatures

  Public
  Code related to the "Finding Haplotypic Signatures in Proteins" publication

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

• VariantPeptideIdentification

  Public
  Code related to the "Retention time and fragmentation predictors increase confidence in identification of common variant peptides" publication

  Python

  •

  MIT License

  •0•1•0•0•Updated Aug 4, 2023Aug 4, 2023

• py-pgatk-UiB-fork

  Public
  Python tools for proteogenomics analysis toolkit

  Python

  •

  Apache License 2.0

  •12•0•0•0•Updated Jun 12, 2023Jun 12, 2023