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    33 repositories

    • web-testing

      Public
      Testing the containerised website build
      HTML
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • blotter

      Public
      Website source code
      HTML
      •2•0•3•1•Updated Oct 21, 2024Oct 21, 2024

    • Taming-the-BEAST.github.io

      Public
      Latest build of the Taming the BEAST website
      HTML
      •6•8•0•0•Updated Oct 9, 2024Oct 9, 2024

    • Skyline-plots

      Public
      Inference of past population dynamics using Bayesian Coalescent Skyline and Birth-Death Skyline plots.
      HTML
      •
      Creative Commons Attribution 4.0 International
      •5•7•3•0•Updated Jun 11, 2024Jun 11, 2024

    • Squamish-BEAST-Tamers-2023-Lectures

      Public
      Repository for lectures held at the 2023 TTB workshop in Squamish, British Columbia.
      Creative Commons Attribution 4.0 International
      •1•7•0•0•Updated Aug 22, 2023Aug 22, 2023

    • FBD-tutorial

      Public
      Dating Species Divergences with the Fossilized Birth-Death Process
      TeX
      •7•5•1•0•Updated Aug 11, 2023Aug 11, 2023

    • Prior-selection

      Public
      Prior selection and clock calibration using Influenza A data
      TeX
      •
      Creative Commons Attribution 4.0 International
      •2•1•1•0•Updated Aug 9, 2023Aug 9, 2023

    • Troubleshooting-convergence-issues

      Public
      Post-processing and improving performance
      TeX
      •
      Creative Commons Attribution 4.0 International
      •4•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • Introduction-to-BEAST2

      Public
      This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
      TeX
      •
      Creative Commons Attribution 4.0 International
      •6•8•2•0•Updated Aug 9, 2023Aug 9, 2023

    • Substitution-model-averaging

      Public
      A tutorial using bModelTest
      TeX
      •
      Creative Commons Attribution 4.0 International
      •4•2•0•0•Updated Jul 24, 2023Jul 24, 2023

    • Troubleshooting-initialization-issues

      Public
      TeX
      •0•0•0•0•Updated Jul 20, 2023Jul 20, 2023

    • Mascot-Tutorial

      Public
      Tutorial on how to set-up a Mascot analysis
      TeX
      •
      Creative Commons Attribution 4.0 International
      •4•1•0•0•Updated Jun 9, 2023Jun 9, 2023

    • Tutorial-Template

      Public
      Template for an empty tutorial
      TeX
      •1•1•0•0•Updated Jun 9, 2023Jun 9, 2023

    • Structured-birth-death-model

      Public
      Population structure using the multi-type birth-death model
      TeX
      •4•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • Taming-the-BEAST-2021-Online-Lectures

      Public
      Lecture slides from Taming the BEAST 2021 Online
      1•1•1•0•Updated Jun 11, 2021Jun 11, 2021

    • Taming-the-BEAST-2019-Eh-Lectures

      Public
      Repository for lectures held at the 2019 TTB workshop in Squamish, British Columbia.
      Creative Commons Attribution 4.0 International
      •4•3•0•0•Updated Aug 23, 2019Aug 23, 2019

    • Taming-the-BEAST-2018-Oberaegeri-Lectures

      Public
      Lecture slides of Taming the BEAST 2018 in Oberägeri, Switzerland
      Creative Commons Attribution 4.0 International
      •0•2•0•0•Updated Aug 22, 2019Aug 22, 2019

    • Taming-the-BEAST-2019-Sydney-Lectures

      Public
      Repository for lectures held at the 2019 TTB workshop at the University of Sydney.
      2•1•0•0•Updated Feb 25, 2019Feb 25, 2019

    • TechnicalLectureSources

      Public
      This repository will hold source files for the technical lectures given as part of TTB workshops.
      JavaScript
      •0•0•0•0•Updated Jan 30, 2019Jan 30, 2019

    • Molecular-Dating-Tutorial

      Public
      TeX
      •2•2•1•0•Updated Nov 5, 2018Nov 5, 2018

    • Bacter-Tutorial

      Public
      Taming the BEAST Tutorial for Bacter
      TeX
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jun 21, 2018Jun 21, 2018

    • TTB_Container

      Public
      Configuration files for Docker container that builds and serves the TTB website.
      Shell
      •0•0•0•0•Updated Aug 23, 2017Aug 23, 2017

    • Basic-tip-dating

      Public
      Basics of tip-dating in BEAST2
      TeX
      •1•3•1•0•Updated Aug 4, 2017Aug 4, 2017

    • Taming-the-BEAST-2017-London-Lectures

      Public
      Lecture slides of Taming the BEAST 2017 in London, United Kingdom
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Jul 31, 2017Jul 31, 2017

    • SCOTTI-Tutorial

      Public
      Transmission tree reconstruction with the structured coalescent
      Python
      •
      Creative Commons Attribution 4.0 International
      •2•5•1•0•Updated Jul 24, 2017Jul 24, 2017

    • Taming-the-BEAST-Website-spare

      Public
      Latest build of the Taming the BEAST website
      TeX
      •2•1•0•0•Updated Jul 21, 2017Jul 21, 2017

    • Structured-coalescent

      Public
      Population structure using MultiTypeTree
      TeX
      •
      GNU General Public License v3.0
      •2•2•1•0•Updated Jul 12, 2017Jul 12, 2017

    • Taming-the-BEAST-2017-Waiheke-Lectures

      Public
      Lecture slides of Taming the BEAST 2017 in Waiheke, New Zealand
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Feb 28, 2017Feb 28, 2017

    • adequacy_tutorial

      Public
      TeX
      •1•0•0•0•Updated Feb 9, 2017Feb 9, 2017

    • species-tree-clocks

      Public
      Using StarBEAST2 with species tree relaxed clocks, for Taming the BEAST in the South Pacific
      TeX
      •2•0•0•0•Updated Feb 2, 2017Feb 2, 2017