{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"survivalfm","owner":"aalto-ics-kepaco","isFork":false,"description":"Efficient modelling of linear and pairwise interaction terms in proportional hazards survival models using factorized parametrization.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T13:38:55.598Z"}},{"type":"Public","name":"GO-LTR-prediction","owner":"aalto-ics-kepaco","isFork":false,"description":"Protein function prediction through latent tensor reconstruction","allTopics":["gene-ontology","protein-function-prediction","multi-view-learning","latent-tensor-reconstruction"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-19T07:57:37.855Z"}},{"type":"Public","name":"ProjSe","owner":"aalto-ics-kepaco","isFork":false,"description":"Supervised variables selection by projection operators in kernel space","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-06T14:42:55.177Z"}},{"type":"Public","name":"gradKCCA","owner":"aalto-ics-kepaco","isFork":false,"description":"Implementations of gradKCCA","allTopics":["kernel-methods","projected-gradients","canonical-correlation-analysis","alternating-optimization"],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":15,"forksCount":11,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-16T07:04:35.540Z"}},{"type":"Public","name":"GO_LTR","owner":"aalto-ics-kepaco","isFork":false,"description":"LTR Multiview for Gene Ontology prediction","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-05T11:50:44.039Z"}},{"type":"Public","name":"comboKR","owner":"aalto-ics-kepaco","isFork":false,"description":"comboKR for predicting drug combination response surfaces","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-20T13:54:20.861Z"}},{"type":"Public","name":"LTR_Multiview","owner":"aalto-ics-kepaco","isFork":false,"description":"Polynomial Regression via Latent Tensor Reconstruction - Multiview version ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-09T16:00:15.312Z"}},{"type":"Public","name":"iokr_for_metabolite_identification","owner":"aalto-ics-kepaco","isFork":false,"description":"Repository for the IOKR and MP-IOKR adapted to the metabolite identification problem.","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-12T14:23:11.317Z"}},{"type":"Public","name":"lcms2struct_exp","owner":"aalto-ics-kepaco","isFork":false,"description":"Scripts to run the experiments and analysis for the publication \"Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data\" by Bach et al.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-07T11:50:20.497Z"}},{"type":"Public","name":"msms_rt_ssvm","owner":"aalto-ics-kepaco","isFork":false,"description":"Implementation of the LC-MS²Struct model published in the manuscript \"Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data\" by Bach et al.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":12,"starsCount":6,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-28T13:16:45.739Z"}},{"type":"Public","name":"msms_rt_score_integration","owner":"aalto-ics-kepaco","isFork":false,"description":"Code, Data and Results of the publication: \"Probabilistic Framework for Integration of Tandem-Mass Spectrum and Retention Time Information in Small Molecule Identification\" by Bach et al. 2020","allTopics":["lc-msms","retention-order-prediction","mass-spectrum","metabolite-identification"],"primaryLanguage":{"name":"MAXScript","color":"#00a6a6"},"pullRequestCount":0,"issueCount":2,"starsCount":7,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-06T15:50:00.154Z"}},{"type":"Public","name":"ComboLTR","owner":"aalto-ics-kepaco","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-02T08:53:31.884Z"}},{"type":"Public","name":"comboFM","owner":"aalto-ics-kepaco","isFork":false,"description":"Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines or patient-derived cells.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":26,"forksCount":14,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-10-25T12:07:11.196Z"}},{"type":"Public","name":"retention_order_prediction","owner":"aalto-ics-kepaco","isFork":false,"description":"Code, Data and Results of the publication: \"Liquid-Chromatography Retention Order Prediction for Metabolite Identification\" by Bach et al. 2018","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-22T06:32:48.900Z"}},{"type":"Public","name":"pairwiseMKL","owner":"aalto-ics-kepaco","isFork":false,"description":"pairwiseMKL package","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":5,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-07T11:05:52.458Z"}},{"type":"Public","name":"PMFA","owner":"aalto-ics-kepaco","isFork":false,"description":"Principal Metabolic Flux Mode Analysis","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-07-18T15:48:14.550Z"}},{"type":"Public","name":"MKC_software","owner":"aalto-ics-kepaco","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-06-11T10:13:33.875Z"}},{"type":"Public","name":"scca-hsic","owner":"aalto-ics-kepaco","isFork":false,"description":"MATLAB implementation of SCCA-HSIC","allTopics":["sparsity","dimensionality-reduction","kernel-methods"],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-11-08T07:44:46.298Z"}},{"type":"Public","name":"cca-tutorial","owner":"aalto-ics-kepaco","isFork":false,"description":"Worked examples","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":16,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-09-04T12:18:31.663Z"}},{"type":"Public","name":"Efficient-Discovery-of-Genome-scale-Metabolic-Pathways-for-Synthetic-Biology","owner":"aalto-ics-kepaco","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-06-01T11:44:11.191Z"}},{"type":"Public","name":"softALIGNF","owner":"aalto-ics-kepaco","isFork":false,"description":"ALIGNF+ (soft ALIGNF) python implementation.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-07-03T18:27:22.980Z"}},{"type":"Public","name":"MKC","owner":"aalto-ics-kepaco","isFork":false,"description":"Multi-view Kernel Completion","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-06-01T13:14:32.109Z"}},{"type":"Public","name":"fingerid","owner":"aalto-ics-kepaco","isFork":false,"description":"Molecular fingerprint prediction from MS/MS","allTopics":[],"primaryLanguage":{"name":"MAXScript","color":"#00a6a6"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-05-26T19:50:24.086Z"}},{"type":"Public","name":"fswatch-rsync","owner":"aalto-ics-kepaco","isFork":false,"description":"Watches and synchronizes a local folder with a remote folder via another server over ssh","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":3,"starsCount":56,"forksCount":23,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-04-15T08:28:08.730Z"}},{"type":"Public","name":"metaCCA-matlab","owner":"aalto-ics-kepaco","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-02-20T19:15:31.791Z"}},{"type":"Public","name":"ProteinFunctionPrediction","owner":"aalto-ics-kepaco","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Groff","color":"#ecdebe"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2016-01-27T08:34:21.267Z"}},{"type":"Public","name":"primal_dual_scca","owner":"aalto-ics-kepaco","isFork":false,"description":"Implementation of the Primal-Dual Sparse Canonical Correlation Analysis","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-09-28T13:14:19.614Z"}},{"type":"Public","name":"DeepBiosphere","owner":"aalto-ics-kepaco","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-07-10T16:21:35.480Z"}},{"type":"Public","name":"PPIprediction-w-IOKR-MKL","owner":"aalto-ics-kepaco","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-07-09T12:35:43.281Z"}},{"type":"Public","name":"L2RTA","owner":"aalto-ics-kepaco","isFork":false,"description":"<a href=\"http://hongyusu.github.io/L2RTA/\" rel=\"nofollow\">http://hongyusu.github.io/L2RTA/</a>","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2015-05-17T09:09:10.223Z"}}],"repositoryCount":33,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"aalto-ics-kepaco repositories"}