{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"bioproject-genome-tracker","owner":"guigolab","isFork":false,"description":"Retrieve all the INSDC public assemblies under a BioProject umbrella","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-07T00:04:15.761Z"}},{"type":"Public","name":"ggsashimi","owner":"guigolab","isFork":false,"description":"Command-line tool for the visualization of splicing events across multiple samples","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":12,"starsCount":116,"forksCount":43,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-28T15:18:48.107Z"}},{"type":"Public","name":"grape-nf","owner":"guigolab","isFork":false,"description":"An automated RNA-seq pipeline using Nextflow","allTopics":["rna-seq","pipeline","nextflow","ngs","crg","guigo"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":31,"starsCount":35,"forksCount":10,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-25T13:29:57.892Z"}},{"type":"Public","name":"gencode-cls-master-table","owner":"guigolab","isFork":false,"description":"Results of the GENCODE pipeline to produce a collection of full length high quality transcripts","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-07T11:47:39.463Z"}},{"type":"Public","name":"biogenome-portal","owner":"guigolab","isFork":false,"description":"Biogenome data portal","allTopics":["taxonomy","tree-structure","biodiversity"],"primaryLanguage":{"name":"Vue","color":"#41b883"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T16:22:34.497Z"}},{"type":"Public","name":"tmerge","owner":"guigolab","isFork":false,"description":"Merge transcriptome read-to-genome alignments into non-redundant transcript models","allTopics":["bioinformatics","genomics","genome","sequencing","merge","long-read","transcriptome","transcriptomics"],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":1,"starsCount":12,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T12:42:17.857Z"}},{"type":"Public","name":"beacon-v2","owner":"guigolab","isFork":true,"description":"Unified repository for the GA4GH Beacon v2 API standard","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":19,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T19:30:19.617Z"}},{"type":"Public","name":"LyRic","owner":"guigolab","isFork":false,"description":"Long RNA-seq analysis workflow","allTopics":["bioinformatics","rnaseq","transcriptomics","gencode","cls","snakemake-workflow","pacbio-iso-seq"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":6,"starsCount":12,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T14:15:51.523Z"}},{"type":"Public","name":"file-stream-server","owner":"guigolab","isFork":false,"description":"A little flask API to stream download files given a folder path","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T11:40:41.292Z"}},{"type":"Public","name":"selenoprofiles-nf","owner":"guigolab","isFork":false,"description":"selenoprofiles4 nextflow pipeline","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-07T04:30:00.400Z"}},{"type":"Public","name":"geneidx","owner":"guigolab","isFork":false,"description":"Nextflow pipeline for genome annotation of protein-coding genes","allTopics":["genome-annotation","gene-prediction","nextflow-pipeline"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":2,"starsCount":15,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-21T15:02:16.218Z"}},{"type":"Public","name":"geneid-parameter-files","owner":"guigolab","isFork":false,"description":"Repo with all the geneid parameter files","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-28T08:23:38.310Z"}},{"type":"Public","name":"geneid-param-resolver","owner":"guigolab","isFork":false,"description":"Given a taxID returns the closest parameter file contained in the repository: https://github.com/guigolab/geneid-parameter-files","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-09T12:49:30.843Z"}},{"type":"Public","name":"EPIraction","owner":"guigolab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-07T13:56:08.778Z"}},{"type":"Public","name":"rnaseq-course","owner":"guigolab","isFork":false,"description":"Data for the RNAseq course at CRG","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-17T13:05:31.086Z"}},{"type":"Public","name":"sqtlseeker2-nf","owner":"guigolab","isFork":false,"description":"An automated sQTL mapping pipeline using Nextflow","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":6,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-18T12:11:18.924Z"}},{"type":"Public","name":"hugo-future-imperfect-slim","owner":"guigolab","isFork":true,"description":"Multilingual Blogging Theme for Hugo | Check the Wiki for Documentation","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":194,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-05T13:37:28.527Z"}},{"type":"Public","name":"sQTLseekeR2","owner":"guigolab","isFork":false,"description":"R package to detect splicing QTLs (sQTLs)","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-03T23:02:33.985Z"}},{"type":"Public","name":"spack","owner":"guigolab","isFork":true,"description":"A flexible package manager that supports multiple versions, configurations, platforms, and compilers.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2191,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-30T10:21:44.687Z"}},{"type":"Public","name":"rnaget-r-client","owner":"guigolab","isFork":false,"description":"A R package to query the RNAget compliant servers","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-20T13:52:05.370Z"}},{"type":"Public","name":"rnaget-py-client","owner":"guigolab","isFork":false,"description":"A python client to query the RNAget compliant servers","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-06T08:56:47.038Z"}},{"type":"Public","name":"rnaget-client","owner":"guigolab","isFork":false,"description":"Demo client for the GA4GH rnaget API","allTopics":["rna-seq","ga4gh","large-scale-genomics"],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-30T16:09:49.180Z"}},{"type":"Public","name":"geneid","owner":"guigolab","isFork":false,"description":"Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":2,"starsCount":15,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-19T10:11:37.025Z"}},{"type":"Public","name":"git-tech-session","owner":"guigolab","isFork":false,"description":"Lab tech session on Git, GiHub and GitHub Actions","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":7,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-18T10:11:27.085Z"}},{"type":"Public","name":"jbrowse-plugin-refget-api","owner":"guigolab","isFork":false,"description":"A JBrowse 2 plugin to access servers implementing the refget API of GA4GH","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-18T09:56:11.768Z"}},{"type":"Public","name":"workflow-webhook","owner":"guigolab","isFork":true,"description":"A Github workflow action to push to a webhook","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":46,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-14T15:34:50.427Z"}},{"type":"Public","name":"ansible-role-minknow-guppy-gpu","owner":"guigolab","isFork":true,"description":"Ansible role to install and configure ONT MinKNOW with GPU support when basecalling using guppy","allTopics":[],"primaryLanguage":{"name":"Jinja","color":"#a52a22"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-27T20:13:25.702Z"}},{"type":"Public","name":"chip-nf","owner":"guigolab","isFork":false,"description":"An automated ChIP-seq pipeline using Nextfow","allTopics":["pipeline","nextflow","ngs","chip-seq","crg","guigo","guigolab-nf"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":16,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-06T13:03:53.553Z"}},{"type":"Public","name":"gene-predictions-web","owner":"guigolab","isFork":false,"description":"Web portal for gene prediction data","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-04T07:50:14.851Z"}},{"type":"Public","name":"bamstats","owner":"guigolab","isFork":false,"description":"A command line tool to compute mapping statistics from a BAM file","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":11,"starsCount":20,"forksCount":3,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-07T15:02:58.004Z"}}],"repositoryCount":46,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"guigolab repositories"}