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    12 repositories

    • puffin

      Public
      deep learning-inspired explainable sequence model for transcription initiation
      Python
      •
      Other
      •7•90•1•2•Updated Nov 7, 2024Nov 7, 2024

    • puffin_manuscript

      Public
      Jupyter Notebook
      •4•15•1•0•Updated Oct 21, 2024Oct 21, 2024

    • ddsm

      Public
      Dirichlet Diffusion Score Model for Biological Sequence Generation.
      Jupyter Notebook
      •
      Other
      •9•45•3•1•Updated May 1, 2024May 1, 2024

    • orca

      Public
      sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
      Python
      •
      Other
      •21•81•2•0•Updated Jan 16, 2024Jan 16, 2024

    • Seqstr

      Public
      Python
      •
      MIT License
      •1•4•0•0•Updated Oct 25, 2023Oct 25, 2023

    • Multiplexer

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Aug 21, 2023Aug 21, 2023

    • .github

      Public
      0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

    • quasildr

      Public
      Quasilinear data representations for single-cell omics data analysis
      Jupyter Notebook
      •
      BSD 3-Clause Clear License
      •3•42•1•0•Updated May 4, 2023May 4, 2023

    • Multiplexer-Manuscript

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 11, 2023Feb 11, 2023

    • orca_leukemia

      Public
      Scoring leukemia-associated structural variants for regulatory impact
      Python
      •0•3•0•0•Updated Feb 3, 2023Feb 3, 2023

    • orca_manuscript

      Public
      Jupyter Notebook
      •1•5•0•0•Updated Feb 24, 2022Feb 24, 2022

    • orca-docs

      Public
      HTML
      •0•0•0•0•Updated Aug 17, 2021Aug 17, 2021