Repositories list

• orca

  Public
  sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale

  Python

  •

  Other

  •21•82•3•0•Updated Feb 18, 2025Feb 18, 2025

• InverseFlow

  Public
  Official repo for inverse flow and consistency models.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 15, 2025Feb 15, 2025

• ddsm

  Public
  Dirichlet Diffusion Score Model for Biological Sequence Generation.

  Jupyter Notebook

  •

  Other

  •10•47•5•1•Updated Feb 12, 2025Feb 12, 2025

• puffin

  Public
  deep learning-inspired explainable sequence model for transcription initiation

  Python

  •

  Other

  •8•93•1•2•Updated Nov 7, 2024Nov 7, 2024

• puffin_manuscript

  Public
  Jupyter Notebook

  •4•17•1•0•Updated Oct 21, 2024Oct 21, 2024

• Seqstr

  Public
  Python

  •

  MIT License

  •1•4•0•0•Updated Oct 25, 2023Oct 25, 2023

• Multiplexer

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Aug 21, 2023Aug 21, 2023

• .github

  Public
  0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

• quasildr

  Public
  Quasilinear data representations for single-cell omics data analysis

  Jupyter Notebook

  •

  BSD 3-Clause Clear License

  •4•42•2•0•Updated May 4, 2023May 4, 2023

• Multiplexer-Manuscript

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 11, 2023Feb 11, 2023

• orca_leukemia

  Public
  Scoring leukemia-associated structural variants for regulatory impact

  Python

  •0•4•0•0•Updated Feb 3, 2023Feb 3, 2023

• orca_manuscript

  Public
  Jupyter Notebook

  •1•6•0•0•Updated Feb 24, 2022Feb 24, 2022

• orca-docs

  Public
  HTML

  •0•0•0•0•Updated Aug 17, 2021Aug 17, 2021