{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"axobase","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-30T17:44:33.957Z"}},{"type":"Public","name":"workflows_in_the_cloud","owner":"mdibl","isFork":false,"description":"Workflows in the Cloud","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-26T14:52:04.667Z"}},{"type":"Public","name":"biocore_documentation","owner":"mdibl","isFork":false,"description":"Central repo for all non-project-specific documentation. Includes biocore best practices and guidelines.","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":2,"starsCount":0,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-24T02:50:03.927Z"}},{"type":"Public","name":"mdibl_cloud_control","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-25T13:47:08.883Z"}},{"type":"Public","name":"TransPi","owner":"mdibl","isFork":true,"description":"TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":14,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-02T15:41:19.205Z"}},{"type":"Public","name":"tximport_R","owner":"mdibl","isFork":false,"description":"Repo for tximport R script and accompanying JSON config file","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-12T06:52:24.384Z"}},{"type":"Public","name":"biocore_automated-pca","owner":"mdibl","isFork":false,"description":"A collection of bash and R scripts intended to automate principle components analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-31T23:07:29.518Z"}},{"type":"Public","name":"one-factor_deseq2","owner":"mdibl","isFork":false,"description":"Repository for working with our DEseq2 R script","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-13T20:47:39.320Z"}},{"type":"Public","name":"cwl_development","owner":"mdibl","isFork":false,"description":"a test repository to explore re-organizing and re-structing biocore_analysis","allTopics":[],"primaryLanguage":{"name":"Common Workflow Language","color":"#B5314C"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-23T16:25:52.654Z"}},{"type":"Public","name":"biocore_analysis","owner":"mdibl","isFork":false,"description":"A root directory for Biocore pipeline analysis ","allTopics":[],"primaryLanguage":{"name":"Common Workflow Language","color":"#B5314C"},"pullRequestCount":0,"issueCount":5,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-15T10:57:09.164Z"}},{"type":"Public","name":"IDEA","owner":"mdibl","isFork":false,"description":"Repo for Integrated Differential Expression Analyzer","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-27T15:30:13.474Z"}},{"type":"Public","name":"george_murray","owner":"mdibl","isFork":false,"description":"contains practice exercises","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-02T16:00:45.884Z"}},{"type":"Public","name":"biocore_utils","owner":"mdibl","isFork":false,"description":"Resources for RNA-SEQ pipeline analysis","allTopics":["python","jenkins","cloud","amazon-ec2","ec2-instance","cwl","cfgs","jenkins-master","biocore","worker-nodes","biocore-aws-hybrid","biocore-pipeline","rna-seq-pipelines","spot-fleet-slaves"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":11,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-01-23T15:19:22.743Z"}},{"type":"Public","name":"package_downloads","owner":"mdibl","isFork":false,"description":"A repository to create automations that download and Install external bioinformatics packages.","allTopics":["pipeline","system-management","bioinformatics-tool"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":5,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-01-02T17:21:48.075Z"}},{"type":"Public","name":"pipeline_prep","owner":"mdibl","isFork":false,"description":"","allTopics":["bioinformatics","datasets"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":14,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-30T20:56:38.767Z"}},{"type":"Public","name":"data_downloads","owner":"mdibl","isFork":false,"description":"A repository to create automations that download external datasets ","allTopics":["bioinformatics-data","system-management","biocore","reference-maintenance","dataset-downloads"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-30T19:15:10.347Z"}},{"type":"Public","name":"biocore_misc","owner":"mdibl","isFork":false,"description":"A repository to store miscellaneous scripts and programs used for different admin purposes","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-30T17:39:08.261Z"}},{"type":"Public","name":"UGGS","owner":"mdibl","isFork":false,"description":"Repo for Unusual Gene Group Selector python project","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-09-12T18:03:23.556Z"}},{"type":"Public","name":"DataVisualizationApp","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-08-13T20:32:06.430Z"}},{"type":"Public","name":"rna_seq_pipeline_param","owner":"mdibl","isFork":false,"description":"modified cwl workflows for parameter tweaking","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-07-15T13:05:55.877Z"}},{"type":"Public","name":"flask_server","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-06-20T15:55:26.668Z"}},{"type":"Public","name":"flask_app","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-06-20T14:31:47.743Z"}},{"type":"Public","name":"kristophN","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-06-04T14:09:50.076Z"}},{"type":"Public","name":"biocore_projects","owner":"mdibl","isFork":false,"description":"Repo to contain analysis/json/config/metadata files and descriptions","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-05-20T18:01:28.518Z"}},{"type":"Public","name":"zebrafish_embyo_2018","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-08-21T21:25:43.191Z"}},{"type":"Public","name":"ERCCNormalization","owner":"mdibl","isFork":false,"description":"Experimenting with ERCC spike in normalization","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-07-13T15:28:54.246Z"}},{"type":"Public","name":"andreaT","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-07-10T23:41:30.572Z"}},{"type":"Public","name":"NathanProjects","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-07-09T18:17:10.073Z"}},{"type":"Public","name":"AlejandroTest","owner":"mdibl","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-07-09T17:43:03.448Z"}},{"type":"Public","name":"svaseq","owner":"mdibl","isFork":false,"description":"Collection of SVASeq R scripts for the REGENE14 and REGENE15 datasets","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-06-26T16:48:28.118Z"}}],"repositoryCount":32,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"mdibl repositories"}