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    114 repositories

    • webknossos

      Public
      Visualize, share and annotate your large 3D images online
      neurobiologyreconstructionconnectomicsemmicroscopyhacktoberfestmicroscopy-images
      TypeScript
      •
      GNU Affero General Public License v3.0
      •24•130•452•23•Updated Dec 3, 2024Dec 3, 2024

    • webknossos-libs

      Public
      Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
      hacktoberfestwebknossosvolume-emome-zarr-converter
      Python
      •12•23•76•15•Updated Dec 3, 2024Dec 3, 2024

    • zarr-python

      Public
      An implementation of chunked, compressed, N-dimensional arrays for Python.
      Python
      •
      MIT License
      •287•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • n5-universe

      Public
      Functionality shared across all n5
      Java
      •
      BSD 2-Clause "Simplified" License
      •4•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • n5-zarr

      Public
      Zarr filesystem backend for N5
      Java
      •
      BSD 2-Clause "Simplified" License
      •15•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • blosc-java

      Public
      Java
      •
      MIT License
      •0•1•0•0•Updated Nov 20, 2024Nov 20, 2024

    • n5-blosc

      Public
      Blosc compression for N5
      Java
      •
      BSD 2-Clause "Simplified" License
      •5•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • build-wheels

      Public
      Python
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • dockerfiles

      Public
      Docker images used within scalableminds 🐳
      Python
      •
      MIT License
      •1•1•3•1•Updated Nov 5, 2024Nov 5, 2024

    • zarrita

      Public
      Python
      •
      MIT License
      •6•19•1•1•Updated Sep 28, 2024Sep 28, 2024

    • slurm-packages

      Public
      Slurm packages and dockerfiles.
      Dockerfile
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • zarr.webknossos.org

      Public
      Gallery of OME-Zarr datasets from WEBKNOSSOS
      JavaScript
      •
      MIT License
      •2•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • zarr-java2

      Public
      Java implementation of the Zarr Specification
      Java
      •
      MIT License
      •8•1•0•0•Updated Aug 30, 2024Aug 30, 2024

    • fossildb

      Public
      Versioned Key-Value Store with RocksDB backend and gRPC API
      Scala
      •
      MIT License
      •0•13•4•0•Updated Aug 20, 2024Aug 20, 2024

    • wknml

      Public archive
      Python library for working with webKnossos NML files
      hacktoberfest
      Python
      •
      MIT License
      •3•0•3•0•Updated Aug 7, 2024Aug 7, 2024

    • webknossos-wrap

      Public
      Efficient 3D volume storage format for webKnossos and analyses
      Rust
      •
      MIT License
      •3•8•9•0•Updated Jul 11, 2024Jul 11, 2024

    • remarkable

      Public
      Markdown parser, done right. Commonmark support, extensions, syntax plugins, high speed - all in one. Gulp and metalsmith plugins available. Used by Facebook, Docusaurus and many others! Use https://github.com/breakdance/breakdance for HTML-to-markdown conversion. Use https://github.com/jonschlinkert/markdown-toc to generate a table of contents.
      JavaScript
      •
      MIT License
      •373•0•0•0•Updated May 17, 2024May 17, 2024

    • prop-types

      Public
      Runtime type checking for React props and similar objects
      JavaScript
      •
      MIT License
      •358•0•0•1•Updated May 17, 2024May 17, 2024

    • invoice-compiler

      Public
      Generate invoices from YAML files using puppeteer.
      HTML
      •5•22•0•1•Updated Mar 29, 2024Mar 29, 2024

    • trigger

      Public template
      Abstract React Trigger
      TypeScript
      •
      MIT License
      •225•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • n5-http

      Public
      N5 library implementation using HTTP(S) backend.
      Java
      •
      BSD 2-Clause "Simplified" License
      •6•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • zarr-specs

      Public
      Zarr core protocol for storage and retrieval of N-dimensional typed arrays
      Other
      •28•0•0•0•Updated Jan 8, 2024Jan 8, 2024

    • siibra-matlab

      Public
      Matlab interface to the siibra toolsuite
      MATLAB
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • zeps

      Public
      Zarr Enhancement Proposals
      Ruby
      •
      Creative Commons Zero v1.0 Universal
      •16•0•0•0•Updated Nov 2, 2023Nov 2, 2023

    • tensorflow_builds

      Public
      0•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • ngff

      Public
      Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
      Bikeshed
      •
      Other
      •41•0•0•0•Updated Jul 20, 2023Jul 20, 2023

    • stroke-lesion-segmentation

      Public
      Supplementary materials for the publication "Deep learning-based automated lesion segmentation on mouse stroke magnetic resonance images"
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Jul 20, 2023Jul 20, 2023

    • webknossos-connect

      Public archive
      Connect webKnossos with existing datasets (BossDB, Neuroglancer Precomputed)
      hacktoberfest
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•14•9•Updated Apr 27, 2023Apr 27, 2023

    • boltons

      Public
      🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.
      Python
      •
      Other
      •353•0•0•0•Updated Feb 20, 2023Feb 20, 2023

    • inducoapi

      Public
      A simple python module to generate OpenAPI Description Documents by supplying request/response bodies.
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Jan 8, 2023Jan 8, 2023