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runconf
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runconf
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#!/bin/bash
#
# This script is for configuring adios on the authors' machines
# You can study it to figure out how to configure adios on your system
#
SRCDIR=`dirname ${BASH_SOURCE[0]}`
BUILD_FULL=true
if [ x"$1" == x"lean" ]; then
BUILD_FULL=false
echo "Build ADIOS without extra packages"
fi
if [ `hostname | cut -c 1-4` == "rhea" ]; then
########
# Rhea #
########
source /etc/profile.d/modules.sh
TARGET=`module list 2>&1 | grep "PE"- | sed "s/^.*PE-\([a-z]*\).*/\1/"`
if [ -z "$TARGET" ]; then
echo "Cannot determine Programming environment. Exit"
exit 1
fi
echo "Configure on Rhea for $TARGET env. for user ${USER}"
module unload hdf5
module unload netcdf
module unload PE-gnu
module unload PE-pgi
module unload PE-intel
module unload PE-pathscale
module unload pgi gcc intel pathscale
module unload python
module load PE-$TARGET
#module load python
# Use both seq hdf5 (for utils) and
# parallel hdf5 (for PHDF5 method)
if [ $BUILD_FULL == "true" ]; then
echo "Load modules for full build"
module load hdf5/1.8.11
SEQ_HDF5_DIR=$HDF5_DIR
SEQ_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
module load hdf5-parallel/1.8.11
PAR_HDF5_DIR=$HDF5_DIR
PAR_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
# Seq. and Parallel NetCDF 4
module load netcdf/4.1.3
SEQ_NC_DIR=$NETCDF_DIR
SEQ_NC_CLIB=$NETCDF_CLIB
module unload netcdf
#module load netcdf/4.1.3_par
#PAR_NC_DIR=$NETCDF_DIR
#PAR_NC_CLIB=$NETCDF_CLIB
#module unload netcdf
#module load szip
#module load bzip2
module load dataspaces/1.6.2
module load flexpath/1.12
module load alacrity/1.0.0
module load fastbit/svn
fi
export MPICC=mpicc
export MPICXX=mpiCC
export MPIFC=mpif90
unset EXTRA_CFLAGS
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export EXTRA_CFLAGS="-std=c99"
WITHFLEX=""
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-g -fPIC ${EXTRA_CFLAGS}"
if [ $BUILD_FULL == "true" ]; then
echo "Configure for full build"
$SRCDIR/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/rhea.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--enable-research-transports \
--with-lustre \
--with-dataspaces=$DATASPACES_DIR \
--with-flexpath=$FLEXPATH_DIR \
--with-alacrity=$ALACRITY_DIR \
--with-zlib \
--with-bzip2 \
--with-fastbit=$FASTBIT_DIR \
--with-hdf5=${SEQ_HDF5_DIR} \
--with-hdf5-libs="${SEQ_HDF5_CLIB}" \
#--with-phdf5=${PAR_HDF5_DIR} \
#--with-phdf5-libs="${PAR_HDF5_CLIB}" \
#--with-netcdf=${SEQ_NC_DIR} \
#--with-netcdf-libs="${SEQ_NC_CLIB}" \
#--with-nc4par=${PAR_NC_DIR} \
#--with-nc4par-libs="${PAR_NC_CLIB}" \
#--with-aplod=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-isobar=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-fgr=/ccs/proj/e2e/qliu/tap \
#--with-glib=/ccs/proj/e2e/qliu/glib
#--with-szip=$SZIP_DIR
else
echo "Configure for lean build"
$SRCDIR/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/rhea.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-lustre \
--disable-timers --disable-timer-events
fi
elif [ `hostname | cut -c 1-5` == "titan" ]; then
#source /opt/modules/default/etc/modules.sh
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
#########
# Titan #
#########
#TARGET=pgi
echo "Configure on TITAN (XK7) including staging methods for $TARGET env."
module unload szip
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
module unload fastbit
module unload craype-interlagos craype-interlagos-cu
module unload craype-barcelona craype-abudhabi craype-abudhabi-cu
module unload craype-ivybridge craype-sandybridge craype-haswell
module unload craype-mc8 craype-mc12
module load craype-istanbul
if [ $BUILD_FULL == "true" ]; then
module load dataspaces # /1.6.1
module load flexpath # /1.12
# NOTE hdf5-parallel module does not work with C++ compiler
#module load hdf5-parallel
#module load netcdf-hdf5parallel
#module load szip
#module load papi
fi
unset EXTRA_CFLAGS
unset EXTRA_LIBS
unset LDFLAGS
unset WITHFLEX
unset WITHFASTBIT
unset WITHSZ
export CC=cc
export FC=ftn
export CXX=CC
if [ "$TARGET" == "pgi" ]; then
if [ $BUILD_FULL == "true" ]; then
# FASTBIT needs libstdc++ and -pgcpplibs flag
export LDFLAGS="-pgc++libs"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/titan/$target-cpu"
WITHFLEX="--with-flexpath=$FLEXPATH_DIR"
#export EXTRA_LIBS="/opt/gcc/4.9.0/snos/lib64/libstdc++.a"
export EXTRA_LIBS="${GCC_PATH}/snos/lib64/libstdc++.a"
WITHSZ="--with-sz=/sw/xk6/adios/SZ/1.4.10.0/pgi16.10.0"
fi
export EXTRA_CFLAGS="-fast"
elif [ "$TARGET" == "gnu" ]; then
#export CC=gcc
#export FC=gfortran
#export CXX=g++
#export MPICC=cc
#export MPIFC=ftn
#export MPICXX=CC
# NSSI/FLEXPATH/FASTBIT needs libstdc++
export LDFLAGS=""
export EXTRA_CFLAGS="-Ofast"
if [ $BUILD_FULL == "true" ]; then
module load fastbit
WITHFLEX="--with-flexpath=$FLEXPATH_DIR"
#WITHFLEX="--with-flexpath=/ccs/proj/e2e/chaos/titan/$TARGET"
# FASTBIT needs libstdc++
#WITHFASTBIT="--with-fastbit=$FASTBIT_DIR"
#export EXTRA_LIBS="${GCC_PATH}/snos/lib64/libstdc++.a"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/titan/$TARGET"
WITHSZ="--with-sz=/sw/xk6/adios/SZ/1.4.10.0/gnu4.9.3"
fi
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
fi
# use the two lines below for openmpi
#export CC=mpicc
#export FC=mpif90
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK -DDART_DO_VERSIONING"
export CFLAGS="-fPIC -g -O2 ${EXTRA_CFLAGS}"
if [ $BUILD_FULL == "true" ]; then
LIBS="$EXTRA_LIBS" ${SRCDIR}/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/xk6.$TARGET \
--enable-dependency-tracking \
--disable-maintainer-mode \
--with-cray-pmi=/opt/cray/pmi/default \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--with-dataspaces=$DATASPACES_DIR \
--with-dimes=$DATASPACES_DIR \
--without-infiniband \
$WITHFLEX \
$WITHFASTBIT \
$WITHSZ \
--with-lustre \
--disable-timers --disable-timer-events \
--with-zlib --with-bzip2
#--enable-skel-timing
#--with-fgr=/ccs/proj/e2e/qliu/tap \
#--with-glib=/ccs/proj/e2e/qliu/glib \
#--with-netcdf=/opt/cray/netcdf/3.6.2/netcdf-${TARGET} \
#--with-hdf5=/sw/xt5/hdf5/1.8.2/cnl2.1_gnu4.2.0 \
#--with-nc4par=/opt/cray/netcdf-hdf5parallel/4.0.1.3/netcdf-hdf5parallel-$TARGET \
#--with-phdf5=/opt/cray/hdf5-parallel/1.8.4.1/hdf5-parallel-$TARGET \
#--with-dimes=/ccs/proj/e2e/pnorbert/spaces/$TARGET
#--with-nssi=/ccs/proj/e2e/pnorbert/nssi/xt5/$TARGET \
#--with-datatap=/ccs/home/zf2/work/pe.$TARGET \
#--with-datatap=/ccs/proj/e2e/pnorbert/datatap/xt5/$TARGET \
else
LIBS="$EXTRA_LIBS" ${SRCDIR}/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/xk6.$TARGET \
--enable-dependency-tracking \
--disable-maintainer-mode \
--with-lustre \
--disable-timers --disable-timer-events \
--without-infiniband
fi
elif [ `hostname | cut -c 1-4` == "eos-" ]; then
#################
# EOS Cray XC30 #
#################
#source /opt/modules/default/etc/modules.sh
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
echo "Configure on EOS (Cray XC30) for $TARGET env."
export CC=cc
#export CFLAGS="-Wall -g"
export FC=ftn
export CXX=CC
module unload szip
module unload hdf5
module unload netcdf
module unload netcdf-hdf5parallel
module unload hdf5-parallel
module unload papi
module unload pmi
if [ "$TARGET" == "pgi" ]; then
# NSSI needs -pgc++libs flag
export LDFLAGS="-pgc++libs"
unset EXTRA_LIBS
elif [ "$TARGET" == "gnu" ]; then
# NSSI needs libstdc++
unset LDFLAGS
export EXTRA_LIBS="/opt/gcc/4.8.1/snos/lib64/libstdc++.a"
module swap gcc gcc/4.8.1
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
else
unset LDFLAGS
unset EXTRA_LIBS
unset EXTRA_CFLAGS
fi
module load pmi
module load craype-hugepages2M
CFLAGS="-g -fPIC ${EXTRA_CFLAGS}" ${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/eos.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-cray-pmi=/opt/cray/pmi/default \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--with-dataspaces=/ccs/proj/e2e/dataspaces/eos/1.6.1/$TARGET \
--with-dimes=/ccs/proj/e2e/dataspaces/eos/1.6.1/$TARGET \
elif [ `hostname | cut -c 1-7` == "chester" ]; then
###############
# Chester XK6 #
###############
#source /opt/modules/default/etc/modules.sh
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
echo "Configure on Chester (XK6) for $TARGET env."
export CC=cc
export FC=ftn
export CXX=CC
module unload szip
module unload hdf5
module unload netcdf
module unload netcdf-hdf5parallel
module unload hdf5-parallel
module swap craype-interlagos craype-istanbul
module load dataspaces # /1.6.2
module load flexpath # /1.12
module load fastbit
WITHFASTBIT=""
WITHALACRITY=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export FC=pgf90
export CXX=pgc++
export MPICC=cc
export MPIFC=ftn
export MPICXX=CC
# FASTBIT, ALACRITY need -pgcpplibs flag
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/xk6/pgi"
export FLEXPATH="--with-flexpath=$FLEXPATH_DIR"
export LDFLAGS="-pgc++libs"
unset EXTRA_LIBS
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export FC=gfortran
export CXX=g++
export MPICC=cc
export MPIFC=ftn
export MPICXX=CC
# FASTBIT, ALACRITY needs libstdc++
# PROBLEM: there is libstdc++.so and libtool uses that in any case leading to link error
#WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/xk6/gnu"
#WITHFASTBIT="--with-fastbit=${FASTBIT_DIR}"
#export LDFLAGS="-static -static-libstdc++"
#export EXTRA_LIBS="${GCC_PATH}/snos/lib64/libstdc++.a"
#export FLEXPATH="--with-flexpath=/ccs/proj/e2e/chaos/titan/gnu"
export FLEXPATH="--with-flexpath=$FLEXPATH_DIR"
#module swap gcc gcc/4.4.4
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/xk6/cray"
else
unset LDFLAGS
unset EXTRA_LIBS
unset EXTRA_CFLAGS
fi
CFLAGS="-g -fPIC ${EXTRA_CFLAGS}" LDFLAGS="$LDFLAGS $CRAY_RCA_POST_LINK_OPTS" \
${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/chester.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-cray-pmi=/opt/cray/pmi/default \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--with-dataspaces=$DATASPACES_DIR \
--with-dimes=$DATASPACES_DIR \
$FLEXPATH \
$WITHALACRITY \
$WITHFASTBIT \
--without-infiniband
# --with-lustre=/opt/xt-lustre-ss/2.2_1.6.5/usr \
# --with-dmalloc=/ccs/proj/e2e/qliu/dmalloc.$TARGET \
# --enable-research-transports \
# --with-netcdf=/opt/cray/netcdf/3.6.2/netcdf-${TARGET} \
# --with-nc4par=/opt/cray/netcdf-hdf5parallel/4.0.1.3/netcdf-hdf5parallel-$TARGET \
# --with-phdf5=/opt/cray/hdf5-parallel/1.8.4.1/hdf5-parallel-$TARGET \
# --with-hdf5=/sw/xt5/hdf5/1.8.2/cnl2.1_gnu7.2.3 \
# --with-hdf5=/sw/xt5/hdf5/1.8.2/cnl2.1_gnu4.2.0 \
# --with-cray-ugni-incdir=/opt/cray/gni-headers/2.1-1.0400.4351.3.1.gem/include \
elif [ `hostname -f | cut -c 1-9` == "summitdev" ]; then
#####################
# SUMMITDEV IBM #
#####################
MLIST=`module list 2>&1 ` #| grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
TARGET=`echo $MLIST | grep " xl\/" | sed "s/^.* xl\/.*/xl/"`
if [ -z $TARGET ]; then
TARGET=`echo $MLIST | grep " pgi\/" | sed "s/^.* pgi\/.*/pgi/"`
if [ -z $TARGET ]; then
TARGET=`echo $MLIST | grep " gcc\/" | sed "s/^.* gcc\/.*/gcc/"`
if [ -z $TARGET ]; then
TARGET=`echo $MLIST | grep " clang\/" | sed "s/^.* clang\/.*/clang/"`
fi
fi
fi
echo "Configure on Summitdev for $TARGET env."
unset WITH_DATASPACES
FORTRAN_BUILD="--enable-fortran"
if [ "$TARGET" == "xl" ]; then
export MPICC=mpicc
export MPCXX=mpic++
export MPIFC=mpif90
export CFLAGS="-g -O0"
export FC=xlf90
export CC=xlc
export CXX=xlC
#export LIBS="-lrdmacm -libverbs"
DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/xl
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
elif [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export FC=pgf90
export CXX=pgc++
export MPICC=mpicc
export MPCXX=mpic++
export MPIFC=mpif90
export CFLAGS="-g -O0"
#DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/pgi
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
elif [ "$TARGET" == "gcc" ]; then
export CC=gcc
export FC=gfortran
export CXX=g++
export MPICC=mpicc
export MPCXX=mpic++
export MPIFC=mpif90
export CFLAGS="-g -O0"
DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/gcc
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
elif [ "$TARGET" == "clang" ]; then
export CC=clang
export CXX=clang++
export MPICC=mpicc
export MPCXX=mpic++
export CFLAGS="-g -O0"
DATASPACES_DIR=/ccs/proj/e2e/dataspaces/summitdev/1.6.1/clang
FORTRAN_BUILD="--disable-fortran"
#WITH_DATASPACES="--with-dataspaces=$DATASPACES_DIR --with-dimes=$DATASPACES_DIR"
fi
${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/summitdev.$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
$FORTRAN_BUILD \
--without-datatap \
$WITH_DATASPACES
elif [ `hostname | cut -c 1-4` == "sith" ]; then
########
# Sith #
########
#source /etc/profile.d/modules.sh
TARGET=`module list 2>&1 | grep "PE"- | sed "s/^.*PE-\([a-z]*\).*/\1/"`
if [ -z "$TARGET" ]; then
echo "Cannot determine Programming environment. Exit"
exit 1
fi
echo "Configure on SITH for $TARGET env. for user ${USER}"
module unload hdf5
module unload netcdf
module unload python
#module unload PE-gnu
#module unload PE-pgi
#module unload PE-intel
#module unload PE-pathscale
#module unload pgi gcc intel pathscale
#module load PE-$TARGET
module load python
# Use both seq hdf5 (for utils) and
# parallel hdf5 (for PHDF5 method)
module load hdf5/1.8.10
SEQ_HDF5_DIR=$HDF5_DIR
SEQ_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
module load hdf5/1.8.10_par
PAR_HDF5_DIR=$HDF5_DIR
PAR_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
# Seq. and Parallel NetCDF 4
module load netcdf/4.1.3
SEQ_NC_DIR=$NETCDF_DIR
SEQ_NC_CLIB=$NETCDF_CLIB
module unload netcdf
module load netcdf/4.1.3_par
PAR_NC_DIR=$NETCDF_DIR
PAR_NC_CLIB=$NETCDF_CLIB
module unload netcdf
#module load szip
module load bzip2
module unload dataspaces
unset DATASPACES_DIR
module load dataspaces/1.6.0
export MPICC=mpicc
export MPICXX=mpiCC
export MPIFC=mpif90
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-g -O0 -fPIC"
export CXXFLAGS="-g -O0 -fPIC"
export FCFLAGS="-g -O0 -fPIC"
WITHFLEX=""
WITHFGR=""
WITHFASTBIT=""
WITHALACRITY=""
WITHSZ=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgc++
export FC=pgf90
WITHFLEX="--with-flexpath=/ccs/proj/e2e/chaos/sith/$TARGET"
WITHFGR="--with-fgr=/ccs/proj/e2e/qliu/tap"
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/sith/pgi"
WITHFASTBIT="--with-fastbit=/sw/redhat6/fastbit/svn/rhel6_gnu4.4.7"
WITHSZ="--with-sz=/ccs/proj/e2e/SZ/1.4.10.0/sith/pgi16.9"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/sith-tcp/1.6.pgi"
#DATASPACES_DIR="/ccs/home/hbui/usr/software/dataspaces-dev"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
#export CFLAGS="$CFLAGS -gdwarf-3"
#export FCFLAGS="$FCFLAGS -gdwarf-3"
WITHFLEX="--with-flexpath=/ccs/proj/e2e/chaos/sith/$TARGET"
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/sith/gnu"
WITHFASTBIT="--with-fastbit=/sw/redhat6/fastbit/svn/rhel6_gnu4.8.2"
#DATASPACES_DIR="/ccs/proj/e2e/dataspaces/sith-tcp/1.6.gnu"
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
WITHALACRITY="--with-alacrity=/ccs/proj/e2e/ncsu/alacrity/sith/intel"
WITHFASTBIT="--with-fastbit=/sw/redhat6/fastbit/svn/rhel6_gnu4.8.2"
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
$SRCDIR/configure --prefix=/ccs/proj/e2e/${USER}/ADIOS/sith.$TARGET \
--config-cache \
--disable-maintainer-mode \
--enable-dependency-tracking \
--enable-research-transports \
--with-lustre \
$WITHSZ
#--with-zlib \
#--with-bzip2=$BZIP2_DIR \
#--with-dataspaces=$DATASPACES_DIR \
#$WITHFLEX \
#$WITHFASTBIT \
#$WITHALACRITY \
#--with-aplod=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-isobar=/ccs/proj/e2e/ncsu/sith.gnu \
#--with-hdf5=${SEQ_HDF5_DIR} \
#--with-hdf5-libs="${SEQ_HDF5_CLIB}" \
#--with-netcdf=${SEQ_NC_DIR} \
#--with-netcdf-libs="${SEQ_NC_CLIB}" \
#--with-dimes=$DATASPACES_DIR \
#--with-glib=/ccs/proj/e2e/qliu/glib
#$WITHFGR \
#--with-szip=$SZIP_DIR \
#--with-phdf5=${PAR_HDF5_DIR} \
#--with-phdf5-libs="${PAR_HDF5_CLIB}" \
#--with-nc4par=${PAR_NC_DIR} \
#--with-nc4par-libs="${PAR_NC_CLIB}" \
#--with-dmalloc=/ccs/proj/e2e/qliu/dmalloc.sith.$TARGET
#--with-dmalloc=/ccs/proj/e2e/pnorbert/dmalloc.$TARGET
#--enable-shared --disable-static
#--without-datatap #--without-infiniband
#--with-dmalloc=/ccs/proj/e2e/pnorbert/dmalloc.$TARGET
#--with-datatap=/ccs/home/habbasi/work/ewok/
#--enable-datatap=ib
elif [ `hostname | cut -c 1-4` == "yona" ]; then
########
# Yona #
########
source /etc/profile.d/modules.sh
TARGET=`module list 2>&1 | grep "PE"- | sed "s/^.*PE-\([a-z]*\).*/\1/"`
echo "Configure on Yona for $TARGET env."
module unload hdf5
module unload netcdf
module unload PE-gnu
module unload PE-pgi
module unload PE-intel
module unload PE-pathscale
module unload pgi gcc intel pathscale
#module unload python
module load PE-$TARGET
#module load python
# Use both seq hdf5 (for utils) and
# parallel hdf5 (for PHDF5 method)
module load hdf5/1.8.5
SEQ_HDF5_DIR=$HDF5_DIR
SEQ_HDF5_CLIB=$HDF5_CLIB
module unload hdf5
#module load hdf5/1.8.5_par
#PAR_HDF5_DIR=$HDF5_DIR
#PAR_HDF5_CLIB=$HDF5_CLIB
#module unload hdf5
# Seq. and Parallel NetCDF 4
module load netcdf/3.6.2
SEQ_NC_DIR=$NETCDF_DIR
SEQ_NC_CLIB=$NETCDF_CLIB
module unload netcdf
#module load netcdf/4.1.1_par
#PAR_NC_DIR=$NETCDF_DIR
#PAR_NC_CLIB=$NETCDF_CLIB
#module unload netcdf
export MPICC=mpicc
export MPICXX=mpiCC
export MPIFC=mpif90
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
elif [ "$TARGET" == "intel" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
export CFLAGS="-g -fPIC"
${SRCDIR}/configure --prefix=/ccs/proj/e2e/pnorbert/ADIOS/yona.$TARGET \
--config-cache \
--disable-maintainer-mode \
--enable-dependency-tracking \
--enable-research-transports \
--with-hdf5=${SEQ_HDF5_DIR} \
--with-hdf5-libs="${SEQ_HDF5_CLIB}" \
--with-netcdf=${SEQ_NC_DIR} \
--with-netcdf-libs="${SEQ_NC_CLIB}" \
--with-lustre=/usr \
--without-datatap --without-infiniband
#--with-phdf5=${PAR_HDF5_DIR} \
#--with-phdf5-libs="${PAR_HDF5_CLIB}" \
#--with-nc4par=${PAR_NC_DIR} \
#--with-nc4par-libs="${PAR_NC_CLIB}" \
#--with-dmalloc=/ccs/proj/e2e/pnorbert/dmalloc.$TARGET
#--with-datatap=/ccs/home/habbasi/work/ewok/
#--enable-datatap=ib
elif [ `hostname | cut -c 1-5` == "theta" ]; then
##########
# THETA #
##########
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
CPUARCH=`module list 2>&1 | grep -e craype-broadwell -e craype-haswell -e craype-mic-knl -e craype-ivybridge -e craype-sandybridge -e craype-intel-knc | sed -e "s/.*craype-//"`
echo "Configure on THETA for $TARGET env. for $CPUARCH CPU"
export MPICC=cc
export MPICXX=CC
export MPIFC=ftn
module unload darshan
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
WITHDART=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
export LDFLAGS="-pgc++libs"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
export LDFLAGS=""
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export LDFLAGS=""
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
export CC=cc
export CXX=CC
export FC=ftn
export LDFLAGS=""
export EXTRA_CFLAGS="-h gnu"
else
echo "TARGET must be one of [ pgi | gnu | intel | cray ]"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-fPIC ${EXTRA_CFLAGS}"
${SRCDIR}/configure --prefix=/home/pnorbert/sw/adios/1.12/theta/$TARGET.$CPUARCH \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-cray-pmi-incdir=/opt/cray/pmi/default/include \
--with-cray-pmi-libdir=/opt/cray/pmi/default/lib64 \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--without-infiniband \
--without-hdf5 --without-netcdf
elif [ `hostname -f | cut -c 1-4` == "mira" -o `hostname -f | cut -c 1-5` == "cetus" ]; then
#####################
# MIRA BlueGene #
#####################
echo "Configure on Mira (BlueGene/Q)"
#export MPICC=mpicc
#export MPIFC=mpif90
#export CFLAGS=""
#export FC=gfortran
#export CC=gcc
#export FCFLAGS="-funderscoring"
export MPICC=mpixlc_r
export MPIFC=mpixlf90_r
export CFLAGS=""
export FC=xlf90_r
export CC=xlc_r
${SRCDIR}/configure --prefix=/home/pnorbert/sw/adios/xl \
--disable-maintainer-mode \
--disable-timers \
--enable-dependency-tracking \
--without-datatap --without-infiniband --with-bgq
elif [ `hostname -f | cut -c 1-5` == "vesta" ]; then
######################
# VESTA BlueGene #
######################
echo "Configure on Vesta (BlueGene/Q)"
export MPICC=mpixlc_r
export MPIFC=mpixlf90
export CFLAGS=""
export FC=bgxlf90
export CC=bgxlc
${SRCDIR}/configure --prefix=/home/qliu/ADIOS \
--disable-maintainer-mode \
--enable-dependency-tracking \
--without-datatap --without-infiniband --with-bgq
elif [ `hostname | cut -c 1-4` == "cori" ]; then
##########
# CORI #
##########
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
CPUARCH=`module list 2>&1 | grep -e craype-broadwell -e craype-haswell -e craype-mic-knl -e craype-ivybridge -e craype-intel-knc | sed -e "s/.*craype-//"`
echo "Configure on CORI for $TARGET env. for $CPUARCH CPU"
export MPICC=cc
export MPICXX=CC
export MPIFC=ftn
module unload darshan
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
module load python
WITHDART=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
export LDFLAGS="-pgcpplibs"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
export LDFLAGS=""
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export LDFLAGS=""
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
export CC=cc
export CXX=CC
export FC=ftn
export LDFLAGS=""
export EXTRA_CFLAGS="-h gnu"
else
echo "TARGET must be one of [ pgi | gnu | intel | cray ]"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-fPIC ${EXTRA_CFLAGS}"
${SRCDIR}/configure --prefix=/global/homes/p/pnorbert/adios/1.12/cori/$TARGET.$CPUARCH \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-lustre=/usr \
--with-cray-pmi-incdir=/opt/cray/pmi/default/include \
--with-cray-pmi-libdir=/opt/cray/pmi/default/lib64 \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--without-infiniband \
--without-hdf5 --without-netcdf
elif [ `hostname | cut -c 1-6` == "edison" ]; then
##########
# EDISON #
##########
TARGET=`module list 2>&1 | grep "PrgEnv"- | sed "s/^.*PrgEnv-\([a-z]*\).*/\1/"`
echo "Configure on EDISON for $TARGET env."
export MPICC=cc
export MPICXX=CC
export MPIFC=ftn
module unload darshan
module unload automake
module unload autoconf
module unload hdf5
module unload netcdf
module unload hdf5-parallel
module unload netcdf-hdf5parallel
module unload PrgEnv-gnu
module unload PrgEnv-pgi
module unload PrgEnv-pathscale
module unload PrgEnv-cray
module load PrgEnv-$TARGET
module swap cray-libsci
module unload darshan
module load automake/1.15
module load autoconf
module load python
WITHDART=""
if [ "$TARGET" == "pgi" ]; then
export CC=pgcc
export CXX=pgCC
export FC=pgf90
export LDFLAGS="-pgcpplibs"
elif [ "$TARGET" == "gnu" ]; then
export CC=gcc
export CXX=g++
export FC=gfortran
export LDFLAGS=""
elif [ "$TARGET" == "intel" ]; then
export CC=icc
export CXX=icpc
export FC=ifort
export LDFLAGS=""
elif [ "$TARGET" == "cray" ]; then
export EXTRA_CFLAGS="-h gnu"
export CC=cc
export CXX=CC
export FC=ftn
export LDFLAGS=""
export EXTRA_CFLAGS="-h gnu"
else
echo "TARGET must be pgi or gnu or intel"
exit 1
fi
export CPPFLAGS="-DMPICH_IGNORE_CXX_SEEK"
export CFLAGS="-fPIC ${EXTRA_CFLAGS}"
${SRCDIR}/configure --prefix=/global/homes/p/pnorbert/adios/master/edison/$TARGET \
--disable-maintainer-mode \
--enable-dependency-tracking \
--with-lustre=/usr \
--with-cray-pmi-incdir=/opt/cray/pmi/default/include \
--with-cray-pmi-libdir=/opt/cray/pmi/default/lib64 \
--with-cray-ugni-incdir=/opt/cray/gni-headers/default/include \
--with-cray-ugni-libdir=/opt/cray/ugni/default/lib64 \
--without-infiniband \
--without-hdf5 --without-netcdf
elif [ `hostname | cut -c 1-4` == "dyn9" -o `hostname | cut -c 1-3` == "pnb" ]; then
#######
# Mac #
#######
echo "Configure on Mac"
# but using Apple's default gcc compiler
# export OMPI_CC=$CC
# export OMPI_FC=$FC
# export OMPI_CXX=$CXX
# Installed Homebrew, gcc/gfortran 5.3.0 and OpenMPI 1.10.2 in /usr/local
# But should work with default mpicc and gcc, using --disable-fortran or with Homebrew gfortran
#
unset WITHZFP # build from the included zfp source
USE_GCC5=false
if [ $USE_GCC5 == "true" ]; then
# If want to use gcc/gfortran 5.3.0
export CC=/usr/local/bin/gcc-5
export CXX=/usr/local/bin/g++-5
export FC=/usr/local/bin/gfortran
export OMPI_CC=/usr/local/bin/gcc-5
export OMPI_CXX=/usr/local/bin/g++-5
export OMPI_FC=/usr/local/bin/gfortran
export WITHALACRITY="--with-alacrity=/opt/alacrity/gcc5"
export WITHFASTBIT="--without-fastbit"
export WITHFLEXPATH="--without-flexpath"
export WITHDATASPACES="--without-dataspaces --without-dimes"
#export WITHZFP="--without-zfp"
# ALACRITY, FASTBIT are C++ lib so we need to link with the actual libstdc++
# if the automatically added -lstdc++ does not work
#export LIBS="/usr/local/Cellar/gcc/5.3.0/lib/gcc/5/libstdc++.dylib"
echo "Configure using gcc-5"
else
# If want to use clang C/C++ and gfortran 5.3.0
export CC=/usr/bin/gcc
export CXX=/usr/bin/g++
export FC=/usr/local/bin/gfortran
unset OMPI_CC
unset OMPI_CXX
unset OMPI_FC
# export WITHALACRITY="--with-alacrity=/opt/alacrity/clang"
# export WITHFASTBIT="--with-fastbit=/opt/fastbit"
export WITHDATASPACES="--with-dataspaces=/opt/dataspaces --without-dimes"
export WITHFLEXPATH="--with-flexpath=/opt/chaos"
#export WITHZFP="--with-zfp=/Users/pnb/scratch/zfp-0.5.0"
echo "Configure using clang"
# Problem: test/test_src/selection_api.F90 link will fail because
# gfortran is used which finds the gcc-5 libstdc++ library instead of the system libstdc++
# Manual fix: use mpif90 for that build command, or use "gfortran ... -Wl,-flat_namespace" command
fi
# The rest is common for all
export MPICC=/usr/local/bin/mpicc
export MPIFC=/usr/local/bin/mpif90
export MPICXX=/usr/local/bin/mpicxx
export CFLAGS="-g -O0 -DO_LARGEFILE=0 -fno-common -Wall"
export CXXFLAGS="-g -O0"
export FCFLAGS="-g -O0"
${SRCDIR}/configure --prefix=/opt/adios --disable-shared \
--with-zlib \
${WITHALACRITY} \
${WITHFASTBIT} \
${WITHZFP} \
${WITHDATASPACES} \
${WITHFLEXPATH} \
--with-phdf5=/usr/local
# --disable-mpi --disable-write --disable-fortran \
# --with-netcdf=/opt/netcdf \
# --with-hdf5=/opt/hdf5.seq
elif [ `hostname | cut -c 1-7` == "ubuntu" ]; then
#########################
# Scott's ubuntu laptop #
#########################
echo "Configure on UBUNTU"
export CC=mpicc
${SRCDIR}/configure --prefix=/usr/local/adios \
--enable-dependency-tracking \
#--with-hdf5=/usr/local/hdf5-serial\
#--with-phdf5=/usr/local \
#--with-netcdf=/usr
elif [ `hostname | cut -c 1-13` == "whoopingcough" ]; then
#########################
# Dave's workstation #
#########################
echo "Configure on Whoopingcough"
export CC=mpicc
export CFLAGS="-fPIC -g"
${SRCDIR}/configure --prefix=/apps/adios/install \
--enable-dependency-tracking \
--without-netcdf --without-nc4par --without-hdf5 --without-phdf5 \
--with-dataspaces=/apps/dataspaces
#--with-hdf5=/usr/local/hdf5-serial\
#--with-phdf5=/usr/local \
elif [ `hostname | cut -c 1-6` == "tomato" ]; then
#########################
# Todd's ubuntu laptop #
#########################
echo "Configure on UBUNTU"
export CC=mpicc
${SRCDIR}/configure --prefix=/home/thkorde/local \
--enable-dependency-tracking \
--with-phdf5=/home/thkorde/local \
--with-hdf5=/home/thkorde/local \
--with-netcdf=/home/thkorde/local
elif [ `hostname | cut -c 1-4` == "qliu" ]; then
#########################
# Gary's ubuntu laptop #
#########################
echo "Configure on UBUNTU"
export CC=mpicc