Dockerfile

FROM continuumio/miniconda3
LABEL maintainer="lachlan.grose@monash.edu"

RUN apt-get update -qq && \
    DEBIAN_FRONTEND=noninteractive apt-get install -yq --no-install-recommends \
    gcc \
    g++ \
    libc-dev
    
RUN conda install -c loop3d -c conda-forge map2loop python=3.7 -y
RUN conda install -c conda-forge pip scikit-learn cython numpy==1.20.1 pandas scipy pymc3 jupyter pyamg -y
RUN conda install -c conda-forge ipywidgets
RUN conda install -c conda-forge ipyleaflet
RUN conda install -c conda-forge folium
RUN pip install ipyfilechooser
RUN jupyter nbextension enable --py --sys-prefix ipyleaflet
RUN pip install lavavu-osmesa
COPY LoopStructural LoopStructural
RUN pip install LoopStructural

ENV NB_USER jovyan
ENV NB_UID 1000
ENV HOME /home/${NB_USER}

RUN adduser --disabled-password \
    --gecos "Default user" \
    --uid ${NB_UID} \
    ${NB_USER}
WORKDIR ${HOME}

USER ${NB_USER}


USER root
RUN chown -R ${NB_UID} ${HOME}



RUN conda install -c conda-forge jupyterlab nodejs -y
RUN pip install snakeviz

# Add Tini
ENV TINI_VERSION v0.19.0
ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /tini
RUN chmod +x /tini
ENTRYPOINT ["/tini", "--"]
USER ${NB_USER}

RUN mkdir notebooks
WORKDIR notebooks
# RUN pip install -e LoopStructural
CMD ["jupyter", "notebook", "--ip='0.0.0.0'", "--NotebookApp.token=''", "--no-browser" ]

EXPOSE 8050
EXPOSE 8080:8090