Study Hidden Markov Models (HMM) error

[yang-guoli]

Describe the bug
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i was to rerun the HMM code by use own xtc and tpr files, but it report the error as follow:

To Reproduce
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......

Expected behaviour
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Actual behaviour
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Additional context

• Which version of lipyphilic are you using?
• Which version of Python are you using?
  -python=3.9
• Which OS are you using?

[p-j-smith]

Hi @yang-guoli sorry again for the slow reply. For some reason your thickness.z_thickness array has twice the number of lipids as your membrane atom group. Did you make the same selections when running the thickness calculation and creating the membrane group?