diff --git a/README.md b/README.md index 114c68b..7718158 100755 --- a/README.md +++ b/README.md @@ -14,6 +14,28 @@ *Bioinformatics, btaa657, 22 July 2020*

+## Important notices + + +```diff + +11/2021 + +Following a wrong refactoring, bug in the ND computation was introduced and is now fixed. +It was located in the java code of the PEWO_java subrepository (which is in charge of computaing node distances). +Every node distance (ND) reported by PEWO was consistenlty shifted by +1, making every reported value ND+1. +This +1 shift occured consistently for any query sequence, whatever the selected inputs, software or software parameters. + +CONSEQUENTLY, EXPERIMENTS AND SOFTWARE COMPARISONS PRIOR TO THE BUGFIX ARE STILL VALID. + +Values reported by PEWO in final tables and plots were just shifted by +1. +Following the bugfix there is no shift anymore. +The error was hard to spot as in most experimental setups average NDs are higher than 0 or 1. + +Following this bugfix. PEWO has been attributed a 1.0.0 version tag. +``` + + ## Overview PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic placement algorithms and their software implementation. It focuses on reporting placement accuracy under different conditions and associated computational costs.