From 357daf472485527986b6b7e109277384bce6e75d Mon Sep 17 00:00:00 2001 From: fizwit Date: Sat, 15 Jun 2024 15:51:30 -0700 Subject: [PATCH] fix testRlease, ref name changes, adjust paths relative to tests directory --- tests/testRelease.sh | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/tests/testRelease.sh b/tests/testRelease.sh index 96fb7c7e..5b91abd7 100755 --- a/tests/testRelease.sh +++ b/tests/testRelease.sh @@ -15,20 +15,20 @@ echo Running CRISPRessoWGS CRISPRessoWGS -b Both.Cas9.fastq.smallGenome.bam -r smallGenome/smallGenome.fa -f Cas9.regions.txt --debug &> CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome.log echo TESTING CRISPRESSO2 -diff CRISPResso_on_FANC.Cas9/Reference.nucleotide_frequency_table.txt expectedResults/CRISPResso_on_FANC.Cas9/Reference.nucleotide_frequency_table.txt -diff CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt tests/expectedResults/CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt +diff CRISPResso_on_FANC.Cas9/Nucleotide_frequency_table.txt expectedResults/CRISPResso_on_FANC.Cas9/Nucleotide_frequency_table.txt +diff CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt expectedResults/CRISPResso_on_FANC.Cas9/CRISPResso_quantification_of_editing_frequency.txt echo TESTING CRISPRESSO2 PARAMS -diff CRISPResso_on_params/FANC.nucleotide_frequency_table.txt expectedResults/CRISPResso_on_params/FANC.nucleotide_frequency_table.txt -diff CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt tests/expectedResults/CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt +diff CRISPResso_on_params/FANC.Nucleotide_frequency_table.txt expectedResults/CRISPResso_on_params/FANC.Nucleotide_frequency_table.txt +diff CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt expectedResults/CRISPResso_on_params/CRISPResso_quantification_of_editing_frequency.txt echo TESTING BATCH -diff CRISPRessoBatch_on_FANC/Reference.MODIFICATION_FREQUENCY_SUMMARY.txt tests/expectedResults/CRISPRessoBatch_on_FANC/Reference.MODIFICATION_FREQUENCY_SUMMARY.txt +diff CRISPRessoBatch_on_FANC/MODIFICATION_FREQUENCY_SUMMARY.txt expectedResults/CRISPRessoBatch_on_FANC/MODIFICATION_FREQUENCY_SUMMARY.txt echo TESTING POOLED -diff CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt tests/expectedResults/CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt +diff CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt expectedResults/CRISPRessoPooled_on_Both.Cas9/SAMPLES_QUANTIFICATION_SUMMARY.txt echo TESTING WGS -diff CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt tests/expectedResults/CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt +diff CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt expectedResults/CRISPRessoWGS_on_Both.Cas9.fastq.smallGenome/SAMPLES_QUANTIFICATION_SUMMARY.txt echo Finished