diff --git a/CHANGELOG.md b/CHANGELOG.md index f2d662658..9c0b1c2e1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,64 @@ # Changelog +## [0.2.0-beta.20](https://github.com/pinellolab/pyrovelocity/compare/v0.2.0-beta.19...v0.2.0-beta.20) (2024-07-08) + + +### Bug Fixes + +* **actions:** add build_nix_image artifact registry password ([fc94cc2](https://github.com/pinellolab/pyrovelocity/commit/fc94cc2cbf7923b5a941f002075f3961048e17c9)) +* **actions:** enable parallel cache uploads ([c3cff98](https://github.com/pinellolab/pyrovelocity/commit/c3cff982648ef12eab3bdaca4551e8d237fabfee)) +* **actions:** enable s3 nix cache ([234ddf0](https://github.com/pinellolab/pyrovelocity/commit/234ddf073f4f0b970eb5d1cd9820c49ae11a879a)) +* **actions:** print swap usage ([f129b8b](https://github.com/pinellolab/pyrovelocity/commit/f129b8bcdfcd938dd9e10bae15967d6982c1332b)) +* **actions:** reenable cachix cache ([64b7901](https://github.com/pinellolab/pyrovelocity/commit/64b79012be083abfd5c0b30f865e78e6d1739f68)) +* **actions:** reenable hosted cache ([da269ff](https://github.com/pinellolab/pyrovelocity/commit/da269fff0d1c420b73057fa0ba0194a4a9169a29)) +* **actions:** reenable local nix cache ([a52c831](https://github.com/pinellolab/pyrovelocity/commit/a52c831c96308f67788d1baf46ba48d6b1677e9b)) +* **actions:** reenable nixcached ([15e9e96](https://github.com/pinellolab/pyrovelocity/commit/15e9e968b850ff81fb10cff6f5f9c8dcda26f376)) +* **actions:** reenable remote nix cache ([2a90045](https://github.com/pinellolab/pyrovelocity/commit/2a9004555d358dec4b5052c5949a2d443058992c)) +* **actions:** reenable remote s3 cache ([c12cadc](https://github.com/pinellolab/pyrovelocity/commit/c12cadc4fa1e21df73db6c47e7b75e1a8d587aa9)) +* **actions:** simplify build command execution logic ([375c4d2](https://github.com/pinellolab/pyrovelocity/commit/375c4d263d8802938de920d3bfb6a82250b44dba)) +* **actions:** temporarily disable nix cache upload ([990440a](https://github.com/pinellolab/pyrovelocity/commit/990440a26eb4510a47ea6edea30d604c46b34e26)) +* **actions:** temporarily disable nix cache upload options ([2de1ee1](https://github.com/pinellolab/pyrovelocity/commit/2de1ee100bb89d78ba3ab7110ed16df5e5111cb6)) +* **actions:** use s3-compatibility HMAC keys and disable nixcached ([5ef2162](https://github.com/pinellolab/pyrovelocity/commit/5ef216210448be0a593c0be11cca495fa7cc5bcc)) +* **cid:** add artifact registry password secret env ([30e4652](https://github.com/pinellolab/pyrovelocity/commit/30e4652128b41c32610a9fcbcb6389c4911c31c9)) +* **cid:** decrease swap ([321341b](https://github.com/pinellolab/pyrovelocity/commit/321341b38eaf176c622bcb343488c36a19ba0f09)) +* **cid:** enable parallel cache uploads ([c448bf6](https://github.com/pinellolab/pyrovelocity/commit/c448bf62a322e9def2c66312f47611c8f9e79766)) +* **cid:** enable s3 nix cache for image builds ([777c0b2](https://github.com/pinellolab/pyrovelocity/commit/777c0b2189d2508d66bdb6e793c610bcab348ad9)) +* **cid:** enable s3 nix cache for test and release ([a853056](https://github.com/pinellolab/pyrovelocity/commit/a853056310019fc6bebc919f8793c211cd2be712)) +* **cid:** increase swap space ([737bb28](https://github.com/pinellolab/pyrovelocity/commit/737bb28871064b7ba26858cf949ea93c1e1d867b)) +* **cid:** reenable nixcached ([80d384a](https://github.com/pinellolab/pyrovelocity/commit/80d384a519889fa280d8786ba5c2ff8942e02e55)) +* **cid:** remove unused variables ([2c81db3](https://github.com/pinellolab/pyrovelocity/commit/2c81db37a40fbfc9babcf6437551238b4f1ef385)) +* **cid:** set default swap in build-nix-images ([8c4d47d](https://github.com/pinellolab/pyrovelocity/commit/8c4d47da1dc2d6a47414994fa09de42f3f41eb0a)) +* **cid:** update permissions ([3691884](https://github.com/pinellolab/pyrovelocity/commit/3691884bb789efd0836bc588c65c2510c642113a)) +* **cid:** update swap size ([da15b99](https://github.com/pinellolab/pyrovelocity/commit/da15b99fcbf76068e2e0e1f7e250c1bdf50d2fd6)) +* **cid:** update swap size ([129eb72](https://github.com/pinellolab/pyrovelocity/commit/129eb72650012ec9c12ff947204169916e391b0a)) +* **cid:** use s3-compatibility HMAC keys ([b32e7fd](https://github.com/pinellolab/pyrovelocity/commit/b32e7fd13cfe688b5be4196e5a1908f150fddd44)) +* **containers:** add gcc lib to lib path ([6d1c24b](https://github.com/pinellolab/pyrovelocity/commit/6d1c24b5dd4085af2ce1e63015fec1dc01eb9d58)) +* **containers:** add just syntax extension ([a9f3b7e](https://github.com/pinellolab/pyrovelocity/commit/a9f3b7e564917715b0951d0bbed9612f4f745d19)) +* **containers:** add libgcc lib to lib path ([30067b8](https://github.com/pinellolab/pyrovelocity/commit/30067b80a23629fc8f987d6352cd9cb3dbcc0db9)) +* **containers:** add libgcc.lib lib to lib path ([d32d8d1](https://github.com/pinellolab/pyrovelocity/commit/d32d8d1c64eb9403363aa8a6ae94dcc97327e105)) +* **containers:** disable compression ([853e00b](https://github.com/pinellolab/pyrovelocity/commit/853e00bddba7110adeb5f965147feaca68050885)) +* **containers:** disable timestamp of images ([7b67175](https://github.com/pinellolab/pyrovelocity/commit/7b67175b2f24e1b599c6f7eb77c633c83c852894)) +* **containers:** enable atuin daemon ([046fa6f](https://github.com/pinellolab/pyrovelocity/commit/046fa6f5e51155aef2bd47e29914d184f70017cd)) +* **containers:** skip base images ([5c7e001](https://github.com/pinellolab/pyrovelocity/commit/5c7e001996b75e0fc9339d03ed6a1ef40e734759)) +* **dev:** constraint config.persistence.accessMode to corev1.#PersistentVolumeAccessMode ([a6fe1d5](https://github.com/pinellolab/pyrovelocity/commit/a6fe1d5bece93f1599420be4f5f5942442ef41ba)) +* **dev:** update base resources ([b8c41d3](https://github.com/pinellolab/pyrovelocity/commit/b8c41d3b82629a03bcb44d3f96d20cf818b651c6)) +* **flake:** define version variable and make ghcr upload conditional on its being non-empty ([47ab603](https://github.com/pinellolab/pyrovelocity/commit/47ab603f03823ca26761894992e3bf04aeb5d836)) +* **flake:** enable ghcr and gar ([ab80d40](https://github.com/pinellolab/pyrovelocity/commit/ab80d407ca0837ca147ceebdff27642f6ffd4d7b)) +* **flake:** note ghcr for server images ([764a534](https://github.com/pinellolab/pyrovelocity/commit/764a5348eff0a2ae492efc4a3f83632a55079939)) +* **flake:** only tag with git sha ([21bfd06](https://github.com/pinellolab/pyrovelocity/commit/21bfd06a1fb88ea8c0b2649bc45af9e7807b72f3)) +* **flake:** push containers to artifact registry ([3400a34](https://github.com/pinellolab/pyrovelocity/commit/3400a34b078a6c17bfaca2493fb7650903a06b77)) +* **flake:** reenable additional tags ([df21086](https://github.com/pinellolab/pyrovelocity/commit/df21086af2b687727556260bb17c11b2903febf7)) +* **flake:** separate base from source-containing layers ([cca450e](https://github.com/pinellolab/pyrovelocity/commit/cca450ed6e64ca32b67bce3e5b23043ea2593bff)) +* **flake:** use flocken fork to enable crane tag ([2f0c60e](https://github.com/pinellolab/pyrovelocity/commit/2f0c60efcf8ff35da857f1756d6b7afd78ca7fea)) +* **make:** add HMAC key vars ([1dc659d](https://github.com/pinellolab/pyrovelocity/commit/1dc659d12c759aaf4a46bd2be763f89b16b409ce)) +* **make:** add s3 nix cache vars ([102a3b5](https://github.com/pinellolab/pyrovelocity/commit/102a3b513a8aa74d8a9787a8a21a9bc86181e329)) +* **make:** set gh artifact registry password secret ([36f5f66](https://github.com/pinellolab/pyrovelocity/commit/36f5f667129620c79aaddd7b9fc8c581623e1051)) +* **nix:** compress layers with zstandard ([667a93d](https://github.com/pinellolab/pyrovelocity/commit/667a93d30642e51dacb17937d57e8affe433c729)) +* **nix:** disable compression of base images ([158150a](https://github.com/pinellolab/pyrovelocity/commit/158150a31ecaecfabaf094e7c691449b577be232)) +* **nix:** move env vars to top layer ([b11fea5](https://github.com/pinellolab/pyrovelocity/commit/b11fea53601bdddedb031ec8f5f1f017fa692133)) +* **nix:** separate maxLayers by three ([86c432e](https://github.com/pinellolab/pyrovelocity/commit/86c432ea17408d12d9589978490a89e00256b8fd)) +* **pre-commit:** ignore flake.lock ([9933c79](https://github.com/pinellolab/pyrovelocity/commit/9933c793eafc445f8a89dda12c464143cd512339)) + ## [0.2.0-beta.19](https://github.com/pinellolab/pyrovelocity/compare/v0.2.0-beta.18...v0.2.0-beta.19) (2024-06-29) diff --git a/pyproject.toml b/pyproject.toml index 610562057..fe9dd24ca 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "pyrovelocity" -version = "0.2.0b19" +version = "0.2.0b20" packages = [{ include = "pyrovelocity", from = "src" }] description = "A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabilistic modeling with pyro." authors = ["pyrovelocity team"]